PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG027800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 423aa MW: 45920.9 Da PI: 4.1966 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 24.1 | 9.8e-08 | 7 | 143 | 4 | 127 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgk....rknratk 79 G F+P+d+ L + +++ +l ++++++d++++ P dL + + + w f+++++ k+a+gk r++ ++ Pavir.9NG027800.1.p 7 GSSFRPRDDASSIALL-RGLRSGAADL-SFVHRADVCSAAPADLVAnlepvpgtdlDQGGYNAIWLFYCPKRFKNAQGKpsghRQRAIAG 94 8889999988775655.5556666577.78**************744778887754222344589******9999965544426666666 PP NAM 80 sgy.WkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyr 127 +g+ W++ k+v+ + ++ + ++ +g +++ ++ W+m ey Pavir.9NG027800.1.p 95 DGTcWHSEAGPKPVKG-LDGATFCNLSFGRKEGgSTRAFNRMGWCMTEYD 143 6655**********99.4445666655555554366677899*******5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.861 | 4 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-13 | 7 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MMAAEDGSSF RPRDDASSIA LLRGLRSGAA DLSFVHRADV CSAAPADLVA NLEPVPGTDL 60 DQGGYNAIWL FYCPKRFKNA QGKPSGHRQR AIAGDGTCWH SEAGPKPVKG LDGATFCNLS 120 FGRKEGGSTR AFNRMGWCMT EYDDKHGGGD GGDHVLCKIY RSSSSLAKGK SKLPTTQHSS 180 GCKRKATGDE PQARPTKTSH KHAACAGVDE EEFLLTDQQM GMPPEPESLC PTEEEQFTFT 240 MEELLGGPVY EEYGGCSPNT QFTMDEMFSK SSGSCSMPAA DDQMEEPQEQ VLEPLLNDDQ 300 MTMPVGIDYE SLFPAEEEQD LVQQNTMVTA EVEQFQQDTL MSTAEEEQLQ QNNLVTAEEQ 360 QLQLNPPFSM DGLLGGQVYH EYGSCSANTQ FAMDELFSGY YGAPTAMAVA PPDVSFFEGL 420 AF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG027800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6S980 | 1e-170 | A0A3L6S980_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J03710.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4574 | 6 | 32 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG027800.1.p |