PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG012600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 345aa    MW: 36805.2 Da    PI: 11.2853
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG012600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.31.5e-12237327898
                NF-YC   8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                          +q   a+d+   ++P+ar++++++a++   + s ea  l+ ka elf+ +++  ++ +a + +++++   ++++av + + f+fl d vp
  Pavir.9NG012600.1.p 237 DQKAAAADLGSCSFPMARVRQLMRAEDATIRASNEAVFLINKASELFLGKFAWDAYRNAVKDRKKSIIYDNLSTAVCSQKGFKFLSDFVP 326
                          567778999999*****************************************************************************9 PP

                NF-YC  98 r 98 
                          +
  Pavir.9NG012600.1.p 327 Q 327
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006247.3E-52852IPR005819Histone H5
PRINTSPR006247.3E-56579IPR005819Histone H5
PRINTSPR006247.3E-5104121IPR005819Histone H5
PRINTSPR006247.3E-5126145IPR005819Histone H5
SuperFamilySSF471136.77E-15236327IPR009072Histone-fold
PfamPF008088.5E-11249312IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-18250327IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAGKKTTPVK PAPPSTQRNG SATPGSKGRP KQASGESSAA SAKARSAPKP RKITQEKPAA  60
AKRKRDKPEP QEGGKRKKQQ ASGDAATPAK KRKKGDGPEP KPAKKKQQPG KPEKPATPSK  120
KQQSSGKPKK PATPVKKQQS PGKPEKPLTP AKKQKSTGKA EKPAPTPKKQ QQSPGKARKS  180
AAPATTPTKK QTKSEKPTPT KRKRGDDEPQ NEARSPKKAS GDGDAPASTP LKKKRKDQKA  240
AAADLGSCSF PMARVRQLMR AEDATIRASN EAVFLINKAS ELFLGKFAWD AYRNAVKDRK  300
KSIIYDNLST AVCSQKGFKF LSDFVPQRVT AVDALKTTTA GNKC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17593RKKQQASGDAATPAKKRKK
28894AKKRKKG
38993KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.287020.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG012600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792625.10.0muscle M-line assembly protein unc-89-like isoform X1
TrEMBLA0A2T7BYG10.0A0A2T7BYG1_9POAL; Uncharacterized protein
STRINGPavir.Ia00103.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.19e-22nuclear factor Y, subunit C10