PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG647000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 383aa MW: 41547.4 Da PI: 6.5061 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.2 | 3.4e-14 | 109 | 160 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + + a+i+ A++Y+++L+ Pavir.9KG647000.1.p 109 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 160 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 107 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.65E-14 | 107 | 164 | No hit | No description |
PROSITE profile | PS50888 | 15.904 | 108 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-17 | 108 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 109 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-10 | 114 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MALEAVVFSP AGHFGYGRGD SPYALPWCDM GDLGAGDYSW DQELDAWAAP AVWDDDWGEA 60 ASARDHSSDA SSDRQQQGKE AAPEPPAPAV RRKRRRTKVA KNKEEMETQR MTHIAVERNR 120 RRQMNEYLAV LRSLMPPSYA HRGDQASIVG GAINYVRELE HLLQSLEVQK SIRNRRGGST 180 DAGGSSSPFA GFFSFPQYST SPAHHGCSSS TSNTSNNAAS SGDVSAESGR PAAVADIEVT 240 MVEGHASLKV LARRRPKQLL KLVAGLHQLR IPPLHLNMTT VDAMVLYTFS LKVEDDSKMG 300 SVEDIATAVH EILGSIQQQE EETAAMGNPA QHLHLSACPL HTALAVPSCQ WNPVACTACD 360 RDCTLGRHLM SHTGSKDTCQ EF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 95 | RKRRR |
2 | 91 | 96 | RKRRRT |
3 | 109 | 120 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG647000.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT203468 | 1e-112 | KT203468.1 Paspalum vaginatum clone Sp11 hypothetical protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796362.1 | 1e-178 | transcription factor bHLH94-like | ||||
Swissprot | Q9C7T4 | 6e-76 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A3L6TQL1 | 0.0 | A0A3L6TQL1_PANMI; Transcription factor bHLH94-like | ||||
STRING | Pavir.J40759.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 5e-66 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG647000.1.p |
Publications ? help Back to Top | |||
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