PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG645000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1025aa    MW: 114288 Da    PI: 5.8499
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG645000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.47.5e-55121292118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          lke ++rwl++ ei++iL+n+++++++ e+++rp+sg l+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+ee
  Pavir.9KG645000.2.p  12 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGLLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEE 101
                          45559************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n++fqrr+yw+Lee++ +ivlvhylevk
  Pavir.9KG645000.2.p 102 NENFQRRSYWMLEEDFMHIVLVHYLEVK 129
                          *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.2678134IPR005559CG-1 DNA-binding domain
SMARTSM010769.8E-7611129IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4814128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.9E-8434520IPR013783Immunoglobulin-like fold
CDDcd001029.89E-5435522No hitNo description
PfamPF018332.2E-10435515IPR002909IPT domain
SuperFamilySSF812961.29E-18436521IPR014756Immunoglobulin E-set
CDDcd002041.22E-12616728No hitNo description
SuperFamilySSF484036.84E-16627730IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-16630731IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.998636730IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.576636668IPR002110Ankyrin repeat
PROSITE profilePS500888.736669701IPR002110Ankyrin repeat
SuperFamilySSF525403.98E-8840893IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407843872IPR000048IQ motif, EF-hand binding site
PfamPF006120.0033844863IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578866890IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4868887IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MPRPRGNVDQ ILKEAQHRWL RPAEICEILK NYRNFRIAPE PPNRPPSGLL FLFDRKVLRY  60
FRKDGHNWRK KRDGKTVKEA HERLKSGSID VLHCYYAHGE ENENFQRRSY WMLEEDFMHI  120
VLVHYLEVKG GKSTSCIRGH DDMLQAARTD SPLSQLPSQT TEGESSVSGQ ATEYEETESD  180
IYSGGAGYHP FSWTQQHENG AGPVMGASIL SSYIPALIVG NHQGFPATAT TTDLYSHGQD  240
ALPVALNEPA LGIALNGADN QLDPSSLNGL PDQGVHQMPP PLITDPSKRF PFFEGPGIES  300
FTFDEVYNGL GIKDADTVDT DEGSLWKLPG AISSFPTEDS FQQNGRSLVE TINYPLLKTQ  360
SSGLSDILKD TFKKSDSFTR WMSKELGEVD DSQIRSSSGV YWNSEETDNI IEASSCDQLD  420
QFTVDPVLAQ DQLFSISDFS PSWTYAGSKT RVLITGRFLN SDEVQRWKWS CMFGEVEVPA  480
EISADGTLRC YSPSHKPGRV PFYVTCSNRL ACSEIREFEF RPSNSKHMDV RSPHDDAKKT  540
YLQMRLDDLL SLGQDEYQAI VSNPTKEIID LSKKISSLMT DNDSWSELLK LACDNELATD  600
DKQDQFFENR LKEKLHIWLV HKAGDGGKGP SVLDEEGQGV LHLAATLGYD WAIRPTISAG  660
VSINFRDAHG WTALHWAAFC GRERTVVALI ALGAAPGALT DPTPDFPTGS TPADLASANG  720
YKGISGFLAE SALISHLQTL DLKETMGSNA SEISSLPGIG DVIERRASPL AGEGLLAGSM  780
GDSLGAVRNA AQAAARIYQV FRMQSFQRKQ AVQYEDENGA ISDNRALSLL SVKPSKPGQL  840
DPLHAAATRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH QVRKHYRKII WSVGIVEKVI  900
LRWRRKGAGL RGFRPTEGAV EGTSSSHNDL IQNKPAQEDY DFLQQGRKQT EERLQKALAR  960
VKSMVQYPDA RDQYQRILTV VTRLQESQAL QEKMLESSTD MDEGFVMSEF QELWDDDMPT  1020
PGNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.166820.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG645000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793890.10.0calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A2S3ITE50.0A0A2S3ITE5_9POAL; Uncharacterized protein
STRINGPavir.Ib00572.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains