PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG632600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 310aa    MW: 33703.3 Da    PI: 4.624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG632600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-112342741055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+AveY+k Lq
  Pavir.9KG632600.1.p 234 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVEYVKFLQ 274
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14226287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-13229283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-12230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-13233278No hitNo description
PfamPF000101.1E-8234274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MESSEASWHS FDPSVAVEDS EAMAQLLAVQ YFVNEQKQPA PTAMYWPGCQ EADQYYGSAP  60
YYMQQPNSGD YAGYYYGGST VTMTGDFFVP DEQVADPSFM LDLNLDFEDQ HEGGGDVPAA  120
CKRKLEDQNG ESTACTVPKK KSRSTPAVPA QKKGRNAQSK KAQKGACSRG NQEESNDGGD  180
GNVQCSGNYL SDDESLEMTA CSNVSSASRK SSSGGGKARA GRGAATDPQS LYARKRRERI  240
NERLKILQNL VPNGTKVDIS TMLEEAVEYV KFLQLQIKLL SSDDMWMFAP IAYNGVNVGL  300
DLKISPPQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG632600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796821.10.0transcription factor bHLH54-like
TrEMBLA0A2S3IT630.0A0A2S3IT63_9POAL; Uncharacterized protein
TrEMBLA0A2T7CG430.0A0A2T7CG43_9POAL; Uncharacterized protein
STRINGPavir.Ib00696.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-47bHLH family protein