PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG612500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 307aa    MW: 32430.2 Da    PI: 6.1761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG612500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-202877255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  Pavir.9KG612500.1.p 28 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 77
                         69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.32E-282787No hitNo description
PfamPF008476.6E-142877IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-212886IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-302886IPR001471AP2/ERF domain
SMARTSM003801.5E-362891IPR001471AP2/ERF domain
PROSITE profilePS5103222.552885IPR001471AP2/ERF domain
PRINTSPR003672.9E-102940IPR001471AP2/ERF domain
PRINTSPR003672.9E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MESYGGRKRA WKKGPTRGKG GPQNAACEYR GVRQRTWGKW VAEIREPNKR TRLWLGSFAT  60
AEEAALAYDE AARRLYGPDA FLNLPHLRAS VTAAAAAHQR LRWLPASARG AAVPAYGLLN  120
LNAQHNVHVI HQRLQELKNG GASPTKPPQG GARVTTPHQL VPPLPASTDT NGGGVAAHAA  180
LPPPPMSCFQ ALEQAVDTAT MAADDGDTEP GEGACPGADK PQLDLREFLQ QIGVLKDEDG  240
AATKGSFHGD AEVGFGGNGE FDWDALAADL NDIAGGHGGV NGGFQMDDLH EVDQFGSCLP  300
IPVWDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162985663ATERF1
3gcc_A2e-162985663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.233427e-32root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG612500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284071e-168KJ728407.1 Zea mays clone pUT6712 AP2-EREBP transcription factor (EREB124) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792152.11e-180dehydration-responsive element-binding protein 2E-like
SwissprotQ10R181e-121DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A3L6TQ281e-180A0A3L6TQ28_PANMI; Dehydration-responsive element-binding protein 2E
STRINGPavir.Ib00517.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.15e-51ERF family protein