PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG610600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 86aa    MW: 9617.92 Da    PI: 9.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG610600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-0811521454
                         HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                  HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                         d+iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  Pavir.9KG610600.1.p 11 DEINELISKLQALLPESSrRRNASRSSASKLLKETCTYIKSL 52
                         68**************6647777889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.496152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-81171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-91167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-61152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSGRRGRISD DEINELISKL QALLPESSRR RNASRSSASK LLKETCTYIK SLHREVDDLS  60
ERLSGLMATM DNDSPQAEII RSLLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.52051e-145callus| root| stem
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG610600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698591e-110EU969859.1 Zea mays clone 336524 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796146.16e-53transcription factor ILI3-like
SwissprotA2XD155e-34ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R475e-34ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A2S3ITT01e-51A0A2S3ITT0_9POAL; Uncharacterized protein
TrEMBLA0A2T7CH391e-51A0A2T7CH39_9POAL; Uncharacterized protein
STRINGPavir.Ib00458.1.p5e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.15e-25bHLH family protein