PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG609800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 334aa MW: 36720 Da PI: 6.6294 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.1e-18 | 112 | 165 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k Pavir.9KG609800.1.p 112 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 165 4568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.3 | 6.7e-41 | 111 | 201 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqv++LE++Fe +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n+ L +++++L++e Pavir.9KG609800.1.p 111 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDVLLSHNKKLQAE 200 69**************************************************************************************98 PP HD-ZIP_I/II 91 l 91 + Pavir.9KG609800.1.p 201 I 201 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 90 | 168 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.01E-19 | 103 | 169 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 107 | 167 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-17 | 110 | 171 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-15 | 112 | 165 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.93E-17 | 112 | 168 | No hit | No description |
PRINTS | PR00031 | 1.6E-5 | 138 | 147 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 142 | 165 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-5 | 147 | 163 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.0E-13 | 167 | 207 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MRPMASNGMA SSPSPFFPPN FLLQMQQTPP DHDPQEHHHH HEHHLPPPLH PHHNPFLPSS 60 QCPSLQDFRG MAPMLGKRPM YGAEVGGVDE ANGGGGANED ELSDDGSQAG EKKRRLNVEQ 120 VRTLEKNFEL GNKLEPERKL QLARALGLQP RQVAIWFQNR RARWKTKQLE KDYDALKRQL 180 DAVKADNDVL LSHNKKLQAE ILALKGREAG SELINLNKET EASCSNRSEN SSEINLDISR 240 TPPSEGPMDP PPSHHHQHPS GGGGGMIPFY PPVGGRPAGV DIDQLLHSTS GPKLEQHGGG 300 GVQAPETASF GNLLCGVDEP PPFWPWADHQ HFH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 167 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18594 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG609800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966490 | 0.0 | EU966490.1 Zea mays clone 294849 homeobox-leucine zipper protein HAT7 mRNA, complete cds. | |||
GenBank | KJ728506 | 0.0 | KJ728506.1 Zea mays clone pUT6811 HB transcription factor (HB102) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796009.1 | 0.0 | homeobox-leucine zipper protein HOX21-like isoform X1 | ||||
Swissprot | Q8S7W9 | 1e-150 | HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | A0A3L6SDB5 | 0.0 | A0A3L6SDB5_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia04323.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-79 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG609800.1.p |