PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG591300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 126aa    MW: 13375.8 Da    PI: 5.3242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG591300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20959255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +g+++AeIrdp  +    r++lg+f+taeeAa+a+++a+ +++g
  Pavir.9KG591300.1.p  9 KYRGVRKRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAMKG 59
                         8********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-15959IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32967IPR001471AP2/ERF domain
SMARTSM003804.4E-36973IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-23968IPR016177DNA-binding domain
CDDcd000187.71E-31967No hitNo description
PROSITE profilePS5103224.46967IPR001471AP2/ERF domain
PRINTSPR003673.6E-121021IPR001471AP2/ERF domain
PRINTSPR003673.6E-123349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MEDDKKEGKY RGVRKRPWGK FAAEIRDPER GGSRVWLGTF DTAEEAARAY DRAAFAMKGA  60
TAVLNFPAGA ATMSGGGGGS SSSSAPAAAG AARGRTTRVP DSEKVELEYL DDRILEDLLA  120
EDKYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-30611411114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.152845e-34root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG591300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275125e-98KJ727512.1 Zea mays clone pUT5371 AP2-EREBP transcription factor (EREB95) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797533.13e-66ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-34ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2S3IUL66e-65A0A2S3IUL6_9POAL; Uncharacterized protein
TrEMBLA0A3L6SED76e-65A0A3L6SED7_PANMI; Uncharacterized protein
STRINGPavir.Ib00287.1.p9e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]