PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG579300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 35948.6 Da PI: 4.5249 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.4e-12 | 163 | 205 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Pavir.9KG579300.1.p 163 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 205 79*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.351 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-16 | 161 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-13 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 163 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-15 | 163 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.19E-5 | 169 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MELDEETFLD ELMSLRGEAA PWQGYPGGVM MSDLLFYGAD ARSGGGMDLP PFQELVPMPP 60 AAPPHEEFNF DCLSEVCNPY RSSGVAAPGE AAPGQTLDAP LHDAMVDEEP SGDKGQCYGG 120 GGSSPTFVFG GGAGESSEMA PIRGVGGPHH KTKLHGAPSK NLMAERRRRK RLNDRLSMLR 180 SIVPKISKMD RTSILGDTID YVKELTERIK ALEEEIGASP EDLNLLNTLK DYSSNSNNEM 240 MVRNSTKFDV EKRDNGSTKI EICCPTNPGV LLSTVNALEV LGLEIEQCVV SCFSDFGMQA 300 SCLQEDGKRQ VISTDEIKQA LFRSAGYGGR CL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 171 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2542 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG579300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964715 | 1e-178 | EU964715.1 Zea mays clone 281052 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796859.1 | 0.0 | transcription factor bHLH61-like | ||||
Swissprot | Q9LSL1 | 2e-65 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A3L6SBZ8 | 0.0 | A0A3L6SBZ8_PANMI; Transcription factor bHLH61-like | ||||
STRING | Pavir.Ib00206.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-67 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG579300.1.p |
Publications ? help Back to Top | |||
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