PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG578100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 34776.2 Da PI: 7.0345 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.1 | 1.8e-49 | 10 | 136 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPt+eel+++yL + v+gkkl++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ Pavir.9KG578100.1.p 10 PGFRFHPTEEELLDFYLDRMVHGKKLHF-DIIGTLNIYRHDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAI 98 9*************************99.99***************99999*************************************** PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++++glkktLvfy+grap+g+ktdWvm+eyrl Pavir.9KG578100.1.p 99 RSSadSKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 136 *99877888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-58 | 6 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.57 | 8 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-25 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MAMEVEQDLP GFRFHPTEEE LLDFYLDRMV HGKKLHFDII GTLNIYRHDP WDLPAMAKIG 60 EREWYFFVPR DRKAGSGGRP NRTTERGFWK ATGSDRAIRS SADSKRVIGL KKTLVFYQGR 120 APRGTKTDWV MNEYRLPDSG AGSGARAPPP PKEDMVLCKI YRKATPLKEL EQRASAMEEM 180 QRRSNAHYTN TARAPQVQAA ASAGDDYLSS DDAHDSFLFP SSSSSAPLGD NYSPPMEAKQ 240 EADATVTVAS TSLMQAANMA IVPPPAVRHG DLPSLQLPTN HGVLDWMQDL SQLRSPWQDQ 300 FFLSPLAHLL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 4 | 163 | 10 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7233 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG578100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107090 | 0.0 | AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795753.1 | 0.0 | NAC domain-containing protein 22 | ||||
Swissprot | Q10S65 | 1e-145 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A3L6S6V0 | 0.0 | A0A3L6S6V0_PANMI; NAC domain-containing protein 67-like | ||||
STRING | Pavir.J24394.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 9e-84 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG578100.1.p |
Publications ? help Back to Top | |||
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