PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG565300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 617aa    MW: 65687.8 Da    PI: 6.5069
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG565300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.6e-093644011954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Pavir.9KG565300.1.p 364 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 401
                          664459******************************88 PP
2BELL85.27.6e-28229298372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           elq+ k kL  +leeVd+rY++y+eq++ +++ Feavag  +a+ Yt+lA+++iSrhFr+L+d ++ q+
  Pavir.9KG565300.1.p 229 LELQRLKDKLYIMLEEVDRRYRRYCEQMRSLAGGFEAVAGERAAAAYTALASRTISRHFRSLRDGMVAQL 298
                          58999************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-45151296IPR006563POX domain
PfamPF075264.2E-42157293IPR006563POX domain
PROSITE profilePS5007111.953342405IPR001356Homeobox domain
SMARTSM003896.6E-9345409IPR001356Homeobox domain
CDDcd000863.93E-12345406No hitNo description
SuperFamilySSF466891.88E-17346413IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-28348411IPR009057Homeodomain-like
PfamPF059208.1E-18362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAHDPSLGFA DYFSAAADAT AMEEGAPELY GLHADMEFLA MRGGLAAMPA ATHGHGHGHN  60
KAVLDDDAGP DGGSATDAAT MQFLSSGGHQ QQQPSQAPLS LSLCRPDGAG GVGVTLHEHL  120
GGSSRHHQQQ PPPAAWMEHD YSAATQGTQH AAAAWHLRSS RFLLPAQQLL HEFCSLPVDS  180
AAKNKQRAKQ ASSTAKPPPP PQQQEDGGEG SSSSACWAPS PQIQAMEALE LQRLKDKLYI  240
MLEEVDRRYR RYCEQMRSLA GGFEAVAGER AAAAYTALAS RTISRHFRSL RDGMVAQLQA  300
ARKALGEKAD VSVPGMTRGD TPRLRVLDQC IRQHKALGMP ETHPWRPQRG LPERAVTILR  360
AWLFEHFLHP YPSDVDKHIL ARQTGLSRSQ VSNWFINARV RLWKPMVEEM YAEEMKADAQ  420
QQDDDGGGAS CGGQQSTNPN YNPSSSEAAD AADRGGVDRK PTREQLMMHD AGSLASVVNI  480
GGAGGAGVSR LDNLGIMVDH LDFDSYGGDQ QQQQQAAGGF GGVSLTLGLQ QHDSHDGGVN  540
IAFGAPTPPS AHHHGGAAGY LFATVGGQQQ MDSGVHPGPH GHHAQFGAAA GIESGEAQEH  600
YRSLGAGFHL LRDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-17351408158Homeobox protein Meis1
4xrs_B9e-17351408158Homeobox protein Meis1
5bng_A1e-16351409159Homeobox protein Meis2
5bng_B1e-16351409159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.159970.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG565300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579620.0EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793662.10.0homeobox protein BEL1 homolog
RefseqXP_025793663.10.0homeobox protein BEL1 homolog
RefseqXP_025793664.10.0homeobox protein BEL1 homolog
RefseqXP_025793665.10.0homeobox protein BEL1 homolog
RefseqXP_025793666.10.0homeobox protein BEL1 homolog
RefseqXP_025793667.10.0homeobox protein BEL1 homolog
RefseqXP_025793668.10.0homeobox protein BEL1 homolog
TrEMBLA0A2S3IUU80.0A0A2S3IUU8_9POAL; Uncharacterized protein
STRINGPavir.Ib00072.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-82TALE family protein