PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG564800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 307aa    MW: 33973.4 Da    PI: 6.0896
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG564800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-072562892154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp+++++++L +++gL+ +q+ +WF N+R +
  Pavir.9KG564800.1.p 256 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 289
                          469*****************************87 PP
2ELK25.43.2e-09210231122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++++++++ ++++E++
  Pavir.9KG564800.1.p 210 ELKIELKQGFKSRIEDVREEIL 231
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-154488IPR005540KNOX1
PfamPF037902.6E-144686IPR005540KNOX1
SMARTSM012561.7E-2399154IPR005541KNOX2
PfamPF037914.1E-18102153IPR005541KNOX2
PROSITE profilePS512139.132210230IPR005539ELK domain
PROSITE profilePS5007111.726230293IPR001356Homeobox domain
SuperFamilySSF466894.71E-16232296IPR009057Homeodomain-like
SMARTSM003891.9E-10232297IPR001356Homeobox domain
CDDcd000866.11E-12233294No hitNo description
Gene3DG3DSA:1.10.10.602.3E-25237296IPR009057Homeodomain-like
PfamPF059201.0E-17250289IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MQGGGDQGGS LGMDVGFAGG AECSSSSATA AAAAAAAAEA EERRLLKGEI AVHPLCEQLV  60
TAHVGCLRVA TPIDHLPLID AQLAQSSGLL HSYAAHHRPF LSPHDKHDLD SFLAQYLMLL  120
CSFREQLQQH VRVHAVEAVM ACREIEQSLQ DLTGATLEEG TGATMSEDED EPPMLEGALD  180
MGSDGQDMMG FGPLLPTDSE RSLMERVRQE LKIELKQGFK SRIEDVREEI LRKRRAGKLP  240
GDTTSILKQW WQQHSKWPYP TEDDKAKLVE ETGLQLKQIN NWFINQRKRN WHNNSQTSTL  300
KSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286305RKRNWHNNSQTSTLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.271310.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}.
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG564800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669070.0EU966907.1 Zea mays clone 298091 homeobox protein HD1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793043.10.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A2S3IUU40.0A0A2S3IUU4_9POAL; Uncharacterized protein
TrEMBLA0A2T7CIP30.0A0A2T7CIP3_9POAL; Uncharacterized protein
STRINGGRMZM2G159431_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-138KNOTTED-like homeobox of Arabidopsis thaliana 7