PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG563700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 334aa    MW: 34871.9 Da    PI: 8.6258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG563700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.7e-14144195155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  Pavir.9KG563700.1.p 144 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRGDQATVVGGAIDYVKQLE 195
                          79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15135203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-12142195No hitNo description
Gene3DG3DSA:4.10.280.102.5E-14142198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.154143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9149200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGSAPVLAAV RAPRLPCSLM CLSTCSAAGS CAAADGVATA VVMEQWAADQ QAAPSTSSQM  60
PFLALLQGAG VVVEDGRKRN AALERAADLD RLESCVTQAA AAGDPAVALP PATRAERRRK  120
RPRPRTRAAP PPEKRRKPEE AESQRMTHIA VERNRRRLMN DHLASLRSLI PSSYIPRGDQ  180
ATVVGGAIDY VKQLEQQLVA LQAAAATRRG VAGAVGTAAT AAADGVFVSP QYASYSEARG  240
CCGGVDVEAM AAVGGHVRVR VAGRRWPGRL VRAVAALEDL RLAVLHLAVT SVGHDAVVYC  300
FNLKMEDGCE VATADEVAAV VHQIFAYAGG TCC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116126RRRKRPRPRTR
2118124RKRPRPR
3118136RKRPRPRTRAAPPPEKRRK
4119123KRPRP
5144155RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG563700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554700.0AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798239.11e-143transcription factor bHLH57-like
TrEMBLA0A2S3IUS91e-142A0A2S3IUS9_9POAL; Uncharacterized protein
STRINGSi040271m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-34bHLH family protein