PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG562000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 666aa    MW: 74187.6 Da    PI: 5.6445
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG562000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.81.7e-5661331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeel+ +yLk+k++gk++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgk
  Pavir.9KG562000.1.p   6 LPPGFRFHPTDEELIIYYLKRKINGKQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGK 94 
                          79****************************.99**************95334455777******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v s +++ vg+kktLv+y+grap+g++t Wvmheyrl
  Pavir.9KG562000.1.p  95 DRKVNS-HRRPVGMKKTLVYYRGRAPHGSRTGWVMHEYRL 133
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-644156IPR003441NAC domain
PROSITE profilePS5100561.1336156IPR003441NAC domain
PfamPF023658.0E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING KQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRPVGMKKT LVYYRGRAPH  120
GSRTGWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHPIEQPQWM  180
ASSVDRSPTL DLSSDVRGDD FESSSFSFPT EAPMESMHGG FGMQMSTGLE DGKWMQFLSE  240
DAFNATNPFF MNPASSSFSC LPSKVDVALE CARLQHRLSL PPLEVEDFPQ DVSLDTKTSI  300
LRSNPNEVDI LQEFLSVSSA SQELINGTSS SYPAEIMWPA SGAAGTSSTG THYINELSSL  360
IELGVKAKEE VDNFYHMGCI GTSSGFASKS VHVDEPVRLV EIADMEEELK EEKKKQVENL  420
RGVRLHNNDL GEIVVEGDEI SNNPTEGITQ YPISDTADNS GEAGHLTDPT DAGGLDTAPI  480
FSQSQPDDFA IGFDDVNPNT SFDLYEKVDV KHGLFISRVG AAKTFFHRVE PSKKVSFHLN  540
PLASDVSKAI EKVHFPISIT TKVSGRVSIF SKFKALIRDK FLVTKPSSYY QRSLGNKETA  600
TVSELLQIVS LLLTPKEVTG PTTTEQELVK KKAEKVMKPE FGCEGSDAWL VPLSKRSKGI  660
SSIFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-55116215174NAC domain-containing protein 19
3swm_B3e-55116215174NAC domain-containing protein 19
3swm_C3e-55116215174NAC domain-containing protein 19
3swm_D3e-55116215174NAC domain-containing protein 19
3swp_A3e-55116215174NAC domain-containing protein 19
3swp_B3e-55116215174NAC domain-containing protein 19
3swp_C3e-55116215174NAC domain-containing protein 19
3swp_D3e-55116215174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG562000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793498.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793499.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793500.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793501.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793502.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793504.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793505.10.0uncharacterized protein LOC112874412 isoform X1
TrEMBLK4A6N60.0K4A6N6_SETIT; Uncharacterized protein
STRINGPavir.Ib00051.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-127NAC domain containing protein 28