PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG561300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 652aa MW: 69649.5 Da PI: 10.552 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93 | 3e-29 | 76 | 160 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plW+++s+++++ g++rs+k+C+ek+en+ k+yk++k+g+ +r ++ + +++f++lea Pavir.9KG561300.2.p 76 RWPRQETLALLKIRSEMDAAFREAALKGPLWDQISRRLEAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 160 8********************************************************************97..66667******985 PP | |||||||
2 | trihelix | 108.1 | 5.9e-34 | 445 | 530 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+e+e+r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a Pavir.9KG561300.2.p 445 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 530 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.922 | 69 | 133 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0018 | 73 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.6E-20 | 75 | 161 | No hit | No description |
CDD | cd12203 | 3.90E-27 | 75 | 140 | No hit | No description |
PROSITE profile | PS50090 | 7.561 | 438 | 502 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0048 | 442 | 504 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.44E-30 | 444 | 509 | No hit | No description |
Pfam | PF13837 | 1.6E-23 | 445 | 531 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MQQPGMPPFF GTPVGVAQNA ATPAPAPEGQ QQQQQQQVDA SGTASAAAAG DHEAAAGMSM 60 SAGGDEGDRG GPSGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWDQIS RRLEAMGYKR 120 SAKKCREKFE NVDKYYKRTK DGRAGRGDGK AYRFFSELEA LHGASSSPAS SLAPTPVAMA 180 PPPTPLPVLP APAMHAEPPP RVAAVPQPAP PMSGTTAAPA AAASGAACMM TTPGDVMSFS 240 SGSDGEDTED TGDGGKRKRH GGDDVGGSSK MMRFFEGLMR QVMERQEEMQ QRFIEAIEKR 300 EQDRMIREEA WRRQEVARLA REQDALAQER AMAASRDAAV VSFIQRVTGQ TIPMPSVAPP 360 ALFMTHPPPL QPTPVASAAP APAPAQHQQR PSIIQLSPKA MPPKLAQPQP QHQTPPPAQP 420 QSKEMIVRAP AAESQDTTPS PSPSRWPKAE VHALIQLRTE LETRYQDSGP KGPLWEDISA 480 GMRRLGYSRS SKRCKEKWEN INKYFKKVKE SNKKRPEDSK TCPYYHQLDA LYRSKALASS 540 SGAGVAAEAA PPRPAHHQAA GGGVTVLAAV PLSQTAPHSH GGKQDCSNGN GNGCAGRGSS 600 SDSGGSSVQG AGGGNGVASN NKLLKKKKKK ASPSPKRRRR RSRGRRRSRC R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 626 | 640 | KKKKASPSPKRRRRR |
2 | 635 | 640 | KRRRRR |
3 | 640 | 650 | RSRGRRRSRCR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG561300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU951659 | 1e-129 | EU951659.1 Zea mays clone 988816 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791925.1 | 0.0 | trihelix transcription factor GTL1-like | ||||
TrEMBL | A0A2T7CIN4 | 0.0 | A0A2T7CIN4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00103.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-49 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG561300.2.p |