PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG551800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 31482.9 Da PI: 6.0939 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.3 | 5e-07 | 168 | 211 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ r+RR+ri ++ +eL +l+P K++ e+Le+A ++k Lq Pavir.9KG551800.1.p 168 AAARQRRKRISEKTAELSRLIPGvH------KMNTTEMLEEAACHVKLLQ 211 677********************55......****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.979 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-10 | 165 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-8 | 165 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.98E-9 | 167 | 214 | No hit | No description |
SMART | SM00353 | 5.6E-8 | 167 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MALSFHPTTA PLFGCYVPAP DAPDLSFLQD VHPEVTNALL GFVYDPLDPA NAALDDLLNL 60 PPHDDDDAFL RRPIHGDGKV ERHCAKRQRA CGDDAWLGAG LARIGAGQQS NGGGNPQVSA 120 LPELPNEFVL PLPLPLPLPP PPPPPQLPEP AADAKKATGN VSQSVQSAAA RQRRKRISEK 180 TAELSRLIPG VHKMNTTEML EEAACHVKLL QAQVGVLALM RTVGSTENEE VASMAQEQMH 240 ALLVRGSVQE RLAAEGKCLV PRKLVDAVAG DSSVKSNALV SRDLGRFMAS LQAAGQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG551800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661333.1 | 1e-132 | uncharacterized protein LOC101765829 | ||||
TrEMBL | A0A2T7CI40 | 1e-157 | A0A2T7CI40_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00235.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 3e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG551800.1.p |