PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG548400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 424aa    MW: 45391.6 Da    PI: 6.6105
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG548400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.8e-10271323557
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                          kr +r   NR +A rs +RK  +i+eLe+kv+ L++e ++L  +l  l+  +a
  Pavir.9KG548400.1.p 271 KRVKRVLANRQSAARSKERKMRYIAELEQKVQILQTEATTLSAQLTLLQRDSA 323
                          999*****************************************999987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-16267331IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.553269332IPR004827Basic-leucine zipper domain
PfamPF001702.5E-9271323IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.34E-11271321No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-10271323No hitNo description
CDDcd147037.20E-24272323No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MNGVGDAHAA AMMQQQQHVQ ARVQQQHLGV SLPMATSFAP EQASAKPRPP GLPPTPPPAF  60
GGQRPSPGDS CTKVDAAAAR KAHHRRSRSD VPFGYFPPAS GGVQVQLPPP KVEVAWGHHP  120
GGGDADDLFN AYLNLEGLDG LNSSDERHDD GDSRGSSMKT NGADSSENES EECAADSRAA  180
GIRLWGGGEG LKRTAAGEPA GAPTARHARS LSMDSLIGKL NFSAGAMPSG GVMPGPNRFS  240
LEFGSGEFTP VEMKKIMADE KLAEMALADP KRVKRVLANR QSAARSKERK MRYIAELEQK  300
VQILQTEATT LSAQLTLLQR DSAGIATQNN ELKFRLQAME QQAQLRDALN EALTAEVQRL  360
KIATAELGDS CSSNNLAQQL QLSAQDQMFQ LQQQQQQQVT PIPFYQLQQA QQNGAGKNQD  420
STE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG548400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715090.0EU971509.1 Zea mays clone 366380 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796879.10.0transcription factor RF2b-like
TrEMBLA0A2T7CI880.0A0A2T7CI88_9POAL; Uncharacterized protein
STRINGSi035841m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35363576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.35e-64bZIP family protein