PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG534700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 35369.6 Da PI: 5.6096 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.6e-11 | 145 | 192 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + +K +K++ L ++eY+k+L+ Pavir.9KG534700.3.p 145 QEHVIAERKRREKLQQQFVALATIVPDL-----TKTDKISLLGSTIEYVKQLE 192 5799***********************9.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.821 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-9 | 145 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-15 | 146 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-14 | 146 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.29E-10 | 147 | 196 | No hit | No description |
SMART | SM00353 | 1.8E-11 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDELNQWRSH PDPEDELAYM YGQQDEHAGM HQHFAERLPE QQQYYAPPTP MAPPRPNPIC 60 PSQPHQQAGS SFPAGFGVPA LPIQPFGALA VNSEQGQPSS SSSILSFGGQ PPSTLNFSGG 120 DWPDGIEAVQ QQVPERRIRA HWNTQEHVIA ERKRREKLQQ QFVALATIVP DLTKTDKISL 180 LGSTIEYVKQ LEDKVKTLKG QSAWRTSDPT VFENKCRISN ENNSDGSGSS GSAFGAGGGF 240 SPTVEASIHG DTVLLKIWCK EGRGVLVMII SELENQGLSI INTSVLPFTD SCLNITITAK 300 IAEGFSTTVE LVRKLTSALR GFST* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 155 | ERKRRE |
2 | 151 | 156 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG534700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798093.1 | 1e-178 | transcription factor bHLH18-like | ||||
TrEMBL | A0A2S3ISN4 | 1e-176 | A0A2S3ISN4_9POAL; Uncharacterized protein | ||||
STRING | Si025088m | 1e-113 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG534700.3.p |