PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG534700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 325aa    MW: 35369.6 Da    PI: 5.6096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG534700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11145192355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ + f  L +++P +     +K +K++ L  ++eY+k+L+
  Pavir.9KG534700.2.p 145 QEHVIAERKRREKLQQQFVALATIVPDL-----TKTDKISLLGSTIEYVKQLE 192
                          5799***********************9.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.821142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15146201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-14146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.29E-10147196No hitNo description
SMARTSM003531.8E-11148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDELNQWRSH PDPEDELAYM YGQQDEHAGM HQHFAERLPE QQQYYAPPTP MAPPRPNPIC  60
PSQPHQQAGS SFPAGFGVPA LPIQPFGALA VNSEQGQPSS SSSILSFGGQ PPSTLNFSGG  120
DWPDGIEAVQ QQVPERRIRA HWNTQEHVIA ERKRREKLQQ QFVALATIVP DLTKTDKISL  180
LGSTIEYVKQ LEDKVKTLKG QSAWRTSDPT VFENKCRISN ENNSDGSGSS GSAFGAGGGF  240
SPTVEASIHG DTVLLKIWCK EGRGVLVMII SELENQGLSI INTSVLPFTD SCLNITITAK  300
IAEGFSTTVE LVRKLTSALR GFST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155ERKRRE
2151156RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG534700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798093.11e-178transcription factor bHLH18-like
TrEMBLA0A2S3ISN41e-176A0A2S3ISN4_9POAL; Uncharacterized protein
STRINGSi025088m1e-113(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-31bHLH family protein