PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG521200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 735aa    MW: 81264 Da    PI: 6.5211
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG521200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.8e-095193347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +WT +E+e + +a +q G++ +++I ++++  +   q++++++ +
  Pavir.9KG521200.2.p 51 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 93
                         6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-104497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-54696IPR009057Homeodomain-like
PROSITE profilePS5129313.1674798IPR017884SANT domain
SMARTSM007175.1E-74896IPR001005SANT/Myb domain
CDDcd001679.73E-75194No hitNo description
PfamPF002499.0E-75193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MEEEVRGELN PLLQTIEFAP STSDPNQKLD LVQPSDPNQK PAKKPTRQWA AWTRQEEENF  60
FNALRQVGKN FEKITHRVQS KNKDQVRHYY YRLVRRMKKL LGPGFSLDAK NSKDTIAAML  120
RWWSLLEKFS CSASKLHLKP RRFKTFVEAL ANQLVKDRNK SRRKCPRVDM CISSPSPIVS  180
KSPGIESFPV KFLPVDAQNG TRVASPKGAF FKRMPETNCS KSGATKGDLS ATRTVKQKRR  240
AGGVVASAAY KKWERAAMAG VSLVADAAEE LERNAINPGV LCNVDARTLT SSPDKLSNVD  300
GISTNQMKEA DSQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSSRK KISSVLEHLN  360
RKWGNSNITS GELILFPYCA HQEDLATYQR WTTRDTVAVA DVFLSVNSPS VFRLRYGWFS  420
LVELEAGVSE ISLTHFENCM IPEDIQVKSP SGDKACVQKN GKNTELPEQP TSAPPSQFGS  480
QKQGQAPVTQ AFEDGQGMNC AAISEGEWAD TLTDISVGYL LTEASKGADL DCIGTSSIKN  540
ALFLENPCSY DSFDAAVALH VSRFQASEQP AHSPHSTIWG AEETCDGFSF NLSASRKQEG  600
SNTPSSSSPD TDSEVHPSNS EGFKGFLQDL TGGEAAGDNT YNDAKDREEF CAKSPPRNED  660
TNELKDQSLA DIYWTDSLGP LDLDIPSVRY QADDLLIGDS QNSWNRMMAN SLDAFRNLSF  720
FSSVDKNDSI PSIM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.184930.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG521200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622360.0BT062236.1 Zea mays full-length cDNA clone ZM_BFb0231C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796639.10.0TSL-kinase interacting protein 1 isoform X2
TrEMBLA0A2S3ISI10.0A0A2S3ISI1_9POAL; Uncharacterized protein
STRINGPavir.Ib01009.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.31e-175TSL-kinase interacting protein 1