PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG521200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 765aa MW: 84518.7 Da PI: 6.5192 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.1e-09 | 51 | 93 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I ++++ + q++++++ + Pavir.9KG521200.1.p 51 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 93 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.77E-10 | 44 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-5 | 46 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.167 | 47 | 98 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-7 | 48 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.98E-7 | 51 | 94 | No hit | No description |
Pfam | PF00249 | 9.4E-7 | 51 | 93 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 765 aa Download sequence Send to blast |
MEEEVRGELN PLLQTIEFAP STSDPNQKLD LVQPSDPNQK PAKKPTRQWA AWTRQEEENF 60 FNALRQVGKN FEKITHRVQS KNKDQVRHYY YRLVRRMKKL LGPGFSLDAK NSKDTIAAML 120 RWWSLLEKFS CSASKLHLKP RRFKTFVEAL ANQLVKDRNK SRRKCPRVDM CISSPSPIVS 180 KSPGIESFPV KFLPVDAQNG TRVASPKGAF FKRMPETNCS KSGATKGDLS ATRTVKQKRR 240 AGGVVASAAY KKWERAAMAG VSLVADAAEE LERNAINPGV LCNVDARTLT SSPDKLSNVD 300 GISTNQMKEA DSQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSSRK KISSVLEHLN 360 RKWGNSNITS GELILFPYCA HQEDLATYQR WTTRDTVAVA DVFLSVNSPS VFRLRYGWFS 420 LVELEAGVSE ISLTHFENCM IPEDIQVKSP SGDKACVQKN GTLFSNSILE QYPCSSKDQS 480 ALLRITPSCI GKNTELPEQP TSAPPSQFGS QKQGQAPVTQ AFEDGQGMNC AAISEGEWAD 540 TLTDISVGYL LTEASKGADL DCIGTSSIKN ALFLENPCSY DSFDAAVALH VSRFQASEQP 600 AHSPHSTIWG AEETCDGFSF NLSASRKQEG SNTPSSSSPD TDSEVHPSNS EGFKGFLQDL 660 TGGEAAGDNT YNDAKDREEF CAKSPPRNED TNELKDQSLA DIYWTDSLGP LDLDIPSVRY 720 QADDLLIGDS QNSWNRMMAN SLDAFRNLSF FSSVDKNDSI PSIM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18493 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG521200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796637.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_025796638.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
TrEMBL | A0A2T7CF77 | 0.0 | A0A2T7CF77_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib01009.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5478 | 36 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 1e-174 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG521200.1.p |