PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG514900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 416aa MW: 43999.2 Da PI: 6.0241 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.5e-13 | 203 | 249 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Pavir.9KG514900.1.p 203 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 249 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.022 | 200 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-11 | 203 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-15 | 204 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-15 | 204 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-13 | 206 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.35E-5 | 213 | 252 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 7.5E-4 | 287 | 338 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MGGHGDHHLQ EVGVLVDDDE EELELHQARV CGGATSGVVE QDAGCCPEAA AGMVFEASSS 60 VGSVSATMAQ PQLLGWPTPP PAPPQQQLHH HHHHHHHHSV SGGEAPFFPL LPPLPPQPPP 120 PPPFLADFYA RRALQFAYDH HHHHHSGGAS TSSDPLGLGG LYMGHHGGSG MMMPPPFASS 180 PFGDFGRMTA QEIMDAKALA ASKSHSEAER RRRERINAHL ARLRSLLPNT TKTDKASLLA 240 EVIQHVKELK RQTSEITEEA CPLPTESDEL TVDASSEEDG RLVVRASLCC DDRADLLPDL 300 IRALKALRLR ALKAEITTLG GRVKNVLFIT GDDSAAAGCE GAADDDQQEE AAAAAPMSPQ 360 HTVASIQEAL RAVMERTASA AAEEPGAAPS GGAGAAGLKR QRTTSLSAIL ENRSI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 213 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG514900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106649 | 0.0 | AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797182.1 | 0.0 | transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 2e-73 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A3L6TGX9 | 0.0 | A0A3L6TGX9_PANMI; Transcription factor bHLH30-like | ||||
STRING | Pavir.Ib01099.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 6e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG514900.1.p |
Publications ? help Back to Top | |||
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