PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG508600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 384aa    MW: 41968.7 Da    PI: 7.1836
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG508600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.13.6e-2649117270
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                          W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + +++ 
  Pavir.9KG508600.2.p  49 WVRDETLCLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSHARH 117
                          ***************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.31641105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.6E-442107IPR009057Homeodomain-like
SMARTSM007173.7E-545107IPR001005SANT/Myb domain
CDDcd122034.35E-2747112No hitNo description
PfamPF138379.3E-1848142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MLLSGPPAAP TPPLLLPESS GEDGGHDSSS RAAAAAAAGS APKRRAETWV RDETLCLIAL  60
RREMDAHFNT SKSNKHLWEA ISARMRDQGF DRSPTMCTDK WRNLLKEFKK ARSHARHNAG  120
GGGGGAGGSG NAKMAYYKEI DDLLKRRGKE SGSGGCVASG SGAGKSPTSN SKIESYLQFT  180
TDNGFEDANI PFGPVEANGR SILSIDDRLE DVRHPLPLTA ADAVATNGVN PWNWRDTSTN  240
GGDNQGTFGG RVILVKWGDY TKRIGIDGTP EAIKEAIKSA FGLRTRRAFW LEDEDEVVRT  300
LDRDMPIGAY TLHLDDGVTI KLCNANRMQT PEDKTFYTEE DFRDFLARRG WTFLREYGGY  360
RNVESLDDLR RGAIYQGMRS LGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-3843139186DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.18110.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG508600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794723.10.0trihelix transcription factor GT-1-like isoform X2
SwissprotQ9FX531e-142TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2S3IS980.0A0A2S3IS98_9POAL; Uncharacterized protein
TrEMBLA0A3L6TF060.0A0A3L6TF06_PANMI; Trihelix transcription factor
STRINGGRMZM2G047370_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-130Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]