PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG507100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 435aa    MW: 46093.3 Da    PI: 6.4346
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG507100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30199257259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  Pavir.9KG507100.1.p 199 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 257
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-31192259IPR003657WRKY domain
PROSITE profilePS5081132.742193259IPR003657WRKY domain
SuperFamilySSF1182904.58E-26196259IPR003657WRKY domain
SMARTSM007746.3E-37198258IPR003657WRKY domain
PfamPF031061.5E-25200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MCDFFWLSPA DQGDLSDVVR ASLQQQQPPP HLRLPATPAA VCSHGSRHLL EEEEAQLLLQ  60
GRVNLRDDDH EAHLPLLHGN GGMGLVVGSN AAVYPQHHPE AEGLAIPQLI MSGPPPQPQL  120
CASSSSFAER GDDAAANAPA APEELAGLDT AMAAAHPHAG PSIKRRKSQT KKVVCIPAPV  180
AAPPGVGGRA STSGEVVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR  240
TDPSMLVITY TSDHNHPWPT QRNALAGSIR PPASSAKSHH HHHRSSAAAD AVPDPTPPPH  300
RHAGNVAVAD NCNATPPVAG SITASVRHHL LLKQEVLDTD NLEPSLLDAA ADHDLGGMIA  360
DVDGALNALC ASSFVHYSEK QQQYGTAGHP EELPEEEDKQ LLLDRDPFSF SFFDWVGASF  420
GVGEAAAANK GGYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-24167260280Disease resistance protein RRS1
5w3x_D9e-24167260280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG507100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187274e-83AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149664e-83AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126184e-83CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546104e-83KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794089.10.0probable WRKY transcription factor 14
TrEMBLA0A2S3IN690.0A0A2S3IN69_9POAL; Uncharacterized protein
TrEMBLA0A2S3IN850.0A0A2S3IN85_9POAL; Uncharacterized protein
STRINGPavir.Ib03051.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-50WRKY DNA-binding protein 35