PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG495600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 271aa    MW: 29052.7 Da    PI: 7.5537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG495600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000151571961155
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +R +++ +++  L++l+ +      +K + a++L +A  +Ik+L+
  Pavir.9KG495600.1.p 157 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAATCIKHLH 196
                          6889999**********999.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.94146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-9157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-5157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MWNCSAPHPF LLPYSDDYAR CEGSSSPAGA VGLDRILPAE YDLCHSLNLA PSLHGLQTPT  60
LFSMNGSEDY LGIGANPIYS GENRPVFSQF SRTNPTAAPH LVSWTAAGET VTGDGSRLRG  120
SKRLKTTTAA ATAQDPHHGL RCNAKPTRNQ SMKAPCKRSQ KLGDKITALQ QLVSPYGKTD  180
TASVLHEAAT CIKHLHEQIQ ILTASYPAIS SPSSLQGTGE EEGPTDLRRR GLCLAPLSPD  240
VVQLVVSAEA ALRHRDTADT EDRWSRLAIL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RLRGSKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG495600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750581e-115EU975058.1 Zea mays clone 466236 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792107.11e-171uncharacterized protein LOC112873346
TrEMBLA0A3L6TN371e-177A0A3L6TN37_PANMI; Uncharacterized protein
STRINGPavir.Ib01295.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-20bHLH family protein