PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG493600.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 735aa MW: 82301 Da PI: 6.6313 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 387.6 | 1.4e-118 | 359 | 730 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++ L++cA+av+++d + a++lL+++++++ +gd qRla++f+ +L+arla+++s+ly++l +++t+ s+ l+a++l+ ++P+ Pavir.9KG493600.4.p 359 LRTILIHCAQAVAADDRRTANELLKQIRHHSKTNGDGAQRLAHCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPF 445 5789************************************************************999999...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 ++sh++ Nq+Il ++++++vHiiDf+i G+QWp+L++ L++R++gpp lRiTg++ p++g +e++eetg+rLa++A+++gvpfe+ Pavir.9KG493600.4.p 446 KRLSHFLSNQTILSMTKNASKVHIIDFGIYFGFQWPCLIRRLSKRDGGPPVLRITGIDVPQPGfrPTERIEETGQRLAEYAKKFGVPFEY 535 **************************************************************9*************************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + +a+++e++++e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salf Pavir.9KG493600.4.p 536 QG-IASKWETIRVEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALF 624 **.7************************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d+lea++pr++ +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++++++ak ++ ++ + + ++e+sg+l Pavir.9KG493600.4.p 625 DMLEATVPRDDAQRALLERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQEIVMKAKDKVKDIYHKDFVIDEDSGWL 714 *****************************************************************************888********** PP GRAS 359 vlgWkdrpLvsvSaWr 374 ++gWk+r ++++S W+ Pavir.9KG493600.4.p 715 LQGWKGRIIYAISTWK 730 ***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.17 | 333 | 710 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-116 | 359 | 730 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MGLDNTYGEL SGMFGGGLSY DGYTDHSSTS DYFRFSDPLP AVVPQMVAEP QSNPSSTVSR 60 ANTETDNPED WEFISDESLN YISRMLLEED IDEKVSMYQA ESVALRAAAK PFYDILGHKF 120 PPSPDHQLIP WSVESPSESC SNSCTQSVAS TVTGSSIGGA VDSNRLYDIG GCEQLEAYGG 180 LCGQSYQPLV GPSSDACSAV GVLEDPLITN GRIPEYLFES LPTWDFRRGI EEAQKFLPVS 240 NKLVFDLGSS GIARPQEARK DASSNARKAN VLNAKKNRQS EDLDLMEGRN IKQSAFCSDE 300 PDWIEMFDDL LRQTEKKATD LRELMRSEAS KNSQVTQTKG PSGPRTRGRK PTKKDVVDLR 360 TILIHCAQAV AADDRRTANE LLKQIRHHSK TNGDGAQRLA HCFADGLEAR LAGTGSQLYH 420 KLVAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKNASKVHII DFGIYFGFQW 480 PCLIRRLSKR DGGPPVLRIT GIDVPQPGFR PTERIEETGQ RLAEYAKKFG VPFEYQGIAS 540 KWETIRVEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV 600 NGSYSVPFFI TRFREALFHF SALFDMLEAT VPRDDAQRAL LERDLFGREA LNVIACEGSD 660 RVERPETYKQ WQVRNLRAGF VQSPLNQEIV MKAKDKVKDI YHKDFVIDED SGWLLQGWKG 720 RIIYAISTWK PKNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-50 | 363 | 730 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4941 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG493600.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727971 | 0.0 | KJ727971.1 Zea mays clone pUT6085 GRAS transcription factor (GRAS67) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794111.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A3L6S7Z0 | 0.0 | A0A3L6S7Z0_PANMI; Scarecrow-like protein 9 | ||||
STRING | Pavir.J32327.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG493600.4.p |