PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG490500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 554aa MW: 63955.8 Da PI: 8.6045

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG490500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.8	3.3e-27	23	110	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++ GFs+r+s+s++ k++++i++rtf+Cs+eg r+++k++ e+++ +r+etr+ C+a++k++++ dg ++++++e eHnH la Pavir.9KG490500.1.p 23 QFYNAYARDKGFSIRRSSSHNVKNSTTIKNRTFCCSREGVRRPDKRE-ESSSYSRPETRCMCQARMKISLT-DGLYCIYEFEPEHNHILA 110 6*****************************************999.999****************.*************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-22	23	110	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-25	206	285	IPR018289	MULE transposase domain
Pfam	PF04434	11	280	297	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-5	435	478	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.557	435	482	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-5	457	484	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
ENCTEDRIPK VGMKFCTEEE AYQFYNAYAR DKGFSIRRSS SHNVKNSTTI KNRTFCCSRE 60 GVRRPDKREE SSSYSRPETR CMCQARMKIS LTDGLYCIYE FEPEHNHILA SSSQVHHLRS 120 QRKITEAQLA SVENAKAVGI SNKATFDLMA KEAGGVENLG FTREDMKNKL YSKRSLQTNY 180 GDTGGVLEYL EKKTSEDGKK LNDGRPFGLL VGVNNHKKTT IFGAALLYDE TAESFVWLFN 240 TFLTAMSGKK PKTILTDEDA AMAKAIKIVL PETHHRICVW HMNQNACKHL AGVVEDYKKF 300 NKDFQNCIYD QEEEEEFINT WNNLLDKNTF SADMVSTQRS ESMNNELKGY ISVKYDILTF 360 FEHFERLVAD KRNEEVKCDF KATQSTPKLK SELRILRHAA RIYTPTIFKV FQEQVMQTLN 420 CDLFYCGESN AEKEYKVKVY GRRNEHVVKF SALEVEVKCS CKKYEFVGIL CCHALKILDI 480 NNIKKIPEHY ILNRWTIDAK VVHIKSNSET HEDPKTKLSK RRHELCRMYI HLANRAAESD 540 ETRRCGEKPK NKT*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

ENCTEDRIPK VGMKFCTEEE AYQFYNAYAR DKGFSIRRSS SHNVKNSTTI KNRTFCCSRE  60
GVRRPDKREE SSSYSRPETR CMCQARMKIS LTDGLYCIYE FEPEHNHILA SSSQVHHLRS  120
QRKITEAQLA SVENAKAVGI SNKATFDLMA KEAGGVENLG FTREDMKNKL YSKRSLQTNY  180
GDTGGVLEYL EKKTSEDGKK LNDGRPFGLL VGVNNHKKTT IFGAALLYDE TAESFVWLFN  240
TFLTAMSGKK PKTILTDEDA AMAKAIKIVL PETHHRICVW HMNQNACKHL AGVVEDYKKF  300
NKDFQNCIYD QEEEEEFINT WNNLLDKNTF SADMVSTQRS ESMNNELKGY ISVKYDILTF  360
FEHFERLVAD KRNEEVKCDF KATQSTPKLK SELRILRHAA RIYTPTIFKV FQEQVMQTLN  420
CDLFYCGESN AEKEYKVKVY GRRNEHVVKF SALEVEVKCS CKKYEFVGIL CCHALKILDI  480
NNIKKIPEHY ILNRWTIDAK VVHIKSNSET HEDPKTKLSK RRHELCRMYI HLANRAAESD  540
ETRRCGEKPK NKT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG490500.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683537.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1W0W5Z8	0.0	A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.J15432.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-87	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.9KG490500.1.p