PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG479800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 24715.8 Da PI: 6.9724 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.1 | 9.5e-41 | 60 | 159 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++l Pavir.9KG479800.1.p 60 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESARADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANEL 149 7***************************************************************************************** PP DUF260 91 kaelallkee 100 k++la++++ Pavir.9KG479800.1.p 150 KVQLARAQAD 159 *****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.369 | 59 | 160 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-41 | 60 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDYGSGSTGT GNTMAPPPQQ YSSCSSVSPP SRVSSCSPPP APHAAQVVVG NAPPTVVLSP 60 CAACKILRRR CADGCVLAPY FPPTEPAKFT TAHRVFGASN IIKLLQDLPE SARADAVSSM 120 VYEAEARLRD PVYGCAGAVC RLQKQANELK VQLARAQADL LNAQAQHANL LALVCVEMAN 180 RRDSHQNQHQ HPSPPLMDGG GGGHFVGAAA YHAFYDSDLD SATWPDHEAQ LWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-41 | 59 | 162 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-41 | 59 | 162 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG479800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953937 | 1e-172 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004987050.2 | 1e-117 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 4e-63 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2T7CE11 | 1e-118 | A0A2T7CE11_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib01336.1.p | 1e-172 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-55 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG479800.1.p |