PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG436800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 717aa    MW: 82986.8 Da    PI: 7.2795
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG436800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.52.2e-2326118191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+YA +  Fsvrks+ + +++++eit r++vCs++g+ ee+  k + k+rr+r  tr+gC  kl++ +++ +g+w+v+++  eHnH+
  Pavir.9KG436800.1.p  26 QFYNAYALTKRFSVRKSYVEWNSDHTEITLRRYVCSRQGYCEEKYVKkEIKKRRPRDITRVGCPVKLVIALDRnSGQWYVKNFIDEHNHP 115
                          6**************************************998886553679999*****************999**************** PP

                 FAR1  89 lap 91 
                          lap
  Pavir.9KG436800.1.p 116 LAP 118
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-2126118IPR004330FAR1 DNA binding domain
PfamPF105514.0E-34239333IPR018289MULE transposase domain
PROSITE profilePS5096610.027516556IPR007527Zinc finger, SWIM-type
SMARTSM005750.0068531558IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MVDLENLMEY SEIVSKMFAD EDEGYQFYNA YALTKRFSVR KSYVEWNSDH TEITLRRYVC  60
SRQGYCEEKY VKKEIKKRRP RDITRVGCPV KLVIALDRNS GQWYVKNFID EHNHPLAPAD  120
LGCLLRSHRS ISDAQKAKIV ELGVAGIRKH QIFEIMEMQC GGYDKIGYTS RDLYNFCHHY  180
KQEIIAAGDA QTIISHLMER QNRDFDFFFK YMTDGEGHLQ GMFWCHTQCL LDYEAFGDVV  240
VFDSTYKTNR YNLPLVPFVG VNHHNRTVIF GCGIISHENI KSYVWLLKTF TEANVQKHPI  300
SEITDGDLAM QRAISVVWPN SPHRLCGWHI EQNLVRNVHD DTVKAQFRIF MYDLCSIEEI  360
ERKWQAFFET YDVTEDSWIY QMYEVRATWC AAYHTGNRYL GLRSNQRSES MNSRLQMKLD  420
GKMTLLEMVQ HYESCLTKVR KIEVDDDVNA LQSEPFTDPD VSFLEVNAKK RFTPNVFKMK  480
VQFSVEAAKQ CSLVEILDGD DTTEYIVGRS DRDMMYYVKC ELTEEANLKE ISCSCRKLQS  540
LGTPCSHIFF VLGIRDESML PDCCVLVRWT MGAKRAFPPI KKSTMYDYSP TLLRYRELRK  600
LSLDVSFAAS RSTKGYERIK RVLEQEAAVI MPNAGANEGN MYGPVLPQAP EVDCEEFRDV  660
LDPVHVPGRG APKKKLKSSS DKTRADSKCS LCKGQGHNRR TCHLRPEVVF DNVHQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1671677PKKKLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG436800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.Ib01630.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-85FAR1-related sequence 5