PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG435000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 353aa MW: 37951.1 Da PI: 6.5956

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG435000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	5.7e-10	156	201	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l Pavir.9KG435000.1.p 156 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLT 201 9****************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	152	216	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	154	217	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-10	156	210	No hit	No description
Pfam	PF00170	1.3E-8	156	202	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-11	156	207	No hit	No description
CDD	cd14703	2.65E-22	157	206	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MQHQQQQPEP ADPPGRAFPP PPAPAPAAAR GAHHRRARSE VAFRLPDDLV LGGGGGPDGD 60 GFDEIGSEDD LFSTFMDIEK ISSSGPSDRD RAAETSSPPR PKHRHSSSVD GSGLFFSPGV 120 GGGSGKDAAA SLAEVMEAKK AMSPEQLAEL AAIDPKRAKR ILANRQSAAR SKERKARYIT 180 ELERKVQTLQ TEATTLSAQL TLFQRDTTGL SAENAELKIR LQAMEQQAQL RDALNDALKQ 240 ELERLKLATG ETTNSSETYN MRFQHVPYNS SFFPLSQQNT APHPGSAQLA PSFNPPHPNV 300 PNHQMQSHPH TLPDIMQQDS LGRLQGLDIG KGPLVVKSES SSISASESSS TF*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MQHQQQQPEP ADPPGRAFPP PPAPAPAAAR GAHHRRARSE VAFRLPDDLV LGGGGGPDGD  60
GFDEIGSEDD LFSTFMDIEK ISSSGPSDRD RAAETSSPPR PKHRHSSSVD GSGLFFSPGV  120
GGGSGKDAAA SLAEVMEAKK AMSPEQLAEL AAIDPKRAKR ILANRQSAAR SKERKARYIT  180
ELERKVQTLQ TEATTLSAQL TLFQRDTTGL SAENAELKIR LQAMEQQAQL RDALNDALKQ  240
ELERLKLATG ETTNSSETYN MRFQHVPYNS SFFPLSQQNT APHPGSAQLA PSFNPPHPNV  300
PNHQMQSHPH TLPDIMQQDS LGRLQGLDIG KGPLVVKSES SSISASESSS TF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4430	0.0	callus\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269\|PubMed:14704272}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG435000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033210	0.0	BT033210.1 Zea mays full-length cDNA clone ZM_BFb0176L19 mRNA, complete cds.
GenBank	BT063263	0.0	BT063263.1 Zea mays full-length cDNA clone ZM_BFc0045A20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795608.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-167	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2S3IQW4	0.0	A0A2S3IQW4_9POAL; Uncharacterized protein
STRING	Pavir.Ib01574.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-73	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG435000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]