PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG422700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 331aa    MW: 36856.7 Da    PI: 9.349
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG422700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31e-104575434
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34
                          k+ rr+++NReAAr+sR+RKka++++Le  
  Pavir.9KG422700.1.p 45 QKVLRRLAQNREAARKSRLRKKAYVQQLESS 75
                         5899************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.4E-83888No hitNo description
SMARTSM003383.2E-742105IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.8754488IPR004827Basic-leucine zipper domain
PfamPF001701.1E-74676IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.5E-74682No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141444.5E-33128203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MADASSRTDT STVVDTDDMN QRSGAIVMAS NSSDRSDKSD KPMDQKVLRR LAQNREAARK  60
SRLRKKAYVQ QLESSKLKLA SLEQEFQKAR QQGIFISSSG DQTHAMSGNG AMTFDLEYSR  120
WQEEQNKQIN ELRTAVNAHA SDSDLRLIVD GIMAHYDEIF RLKGVAAKAD VFHILSGMWK  180
TPAERCFLWL GGFRSSELLK LLVNQLEPLT EQQLMGLSNL QQSSQQAEDA LSQGMEALQQ  240
SLAETLAGSL GPSGSSGNVA NYMGQMAMAM GKLGTLENFL RQADNLRQQT LHQMQRILTI  300
RQAARALLAI HDYFSRLRAL SSLWLARPRE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.116160.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG422700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668520.0BT066852.1 Zea mays full-length cDNA clone ZM_BFb0077I20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678580.10.0transcription factor TGA2.2 isoform X2
SwissprotQ6IVC30.0TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBLA0A368SRP40.0A0A368SRP4_SETIT; Uncharacterized protein
STRINGPavir.Ib01484.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-145bZIP family protein
Publications ? help Back to Top
  1. Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC
    Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light.
    Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20
    [PMID:15986920]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]