PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG421500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 35752.7 Da PI: 4.9473 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.4 | 1.9e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+llv++v+ +G g+W++ ar g++Rt+k+c++rw++yl Pavir.9KG421500.1.p 22 RGPWTVEEDLLLVNYVASHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 69 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Pavir.9KG421500.1.p 75 RGNITPQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.032 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.36E-31 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-16 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-23 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.83E-12 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 18.873 | 74 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-15 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.18E-11 | 79 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MDMAHERDAS SEEEVMAGEL RRGPWTVEED LLLVNYVASH GEGRWNSLAR SAGLKRTGKS 60 CRLRWLNYLR PDLRRGNITP QEQLLILELH SRWGNRWSKI AQHLPGRTDN EIKNYWRTRV 120 QKHAKQLKCD VNSQQFKDVM RYLWMPRLVE RIQAAAAAGA AGAAGQVQAG AADTPPLSSS 180 WQHGADDGFY ASPELPADAC WPAEYYGTAA GDHQLLNNPA VPELSSTTAG SSSPSSDSGA 240 GAQPWRAPVG GAEWFTTACD ASSAAVAMHD AVLAGQQQQQ PCLLGETWAS SELPELGVAD 300 FEIGSFDVES IWSMDDNLWY TQTQGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 13 | 122 | 18 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG421500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038736 | 0.0 | BT038736.1 Zea mays full-length cDNA clone ZM_BFb0316K16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791351.1 | 0.0 | transcription factor MYB2-like | ||||
Swissprot | Q10MB4 | 1e-159 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A1E5W9A3 | 0.0 | A0A1E5W9A3_9POAL; Transcription factor MYB108 | ||||
STRING | Pavir.J39490.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 2e-83 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG421500.1.p |
Publications ? help Back to Top | |||
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