PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG406600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 313aa    MW: 33250.6 Da    PI: 7.4744
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG406600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd+ lv +v+++G+g+W+++ +t g+ R++k+c++rw +yl
  Pavir.9KG406600.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVQATTGLARCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding45.32e-1467112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++  Ed l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Pavir.9KG406600.1.p  67 RGGFSDHEDRLIAHLQALLGNR-WAAIASYLP-DRTDNDVKNYWNTHL 112
                          7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.298965IPR017930Myb domain
SuperFamilySSF466894.77E-3011108IPR009057Homeodomain-like
SMARTSM007172.3E-121363IPR001005SANT/Myb domain
PfamPF002493.0E-161461IPR001005SANT/Myb domain
CDDcd001671.61E-101661No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2265116IPR009057Homeodomain-like
PROSITE profilePS5129417.92666116IPR017930Myb domain
SMARTSM007171.9E-1466114IPR001005SANT/Myb domain
PfamPF002494.8E-1367112IPR001005SANT/Myb domain
CDDcd001671.35E-1070111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV QATTGLARCG KSCRLRWTNY  60
LRPGIRRGGF SDHEDRLIAH LQALLGNRWA AIASYLPDRT DNDVKNYWNT HLKKKLLLLH  120
QHAPPATPSP PPNKNKGQWE LRLQTDIDLA RRALRDALAS PPAGTKMTSG ATAPVLPAPL  180
PAAEPAPAYA LTARDVSCCM LDGWAPPTPD GKKSGSPATP PPPVVAAESA SGSTSELTTE  240
CTSASISSAS NNKCAAPAAA QLFLREEGKA VAGEVPLSEI ESWLLEDGGG EQKPPAHDGT  300
LLDASLLHSF GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG406600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9628481e-162EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794825.11e-148transcription factor MYB30-like
SwissprotP813926e-86MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2S3IQ771e-146A0A2S3IQ77_9POAL; Uncharacterized protein
TrEMBLA0A2T7CC451e-146A0A2T7CC45_9POAL; Uncharacterized protein
STRINGPavir.J35695.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.22e-71myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]