PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG406200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 273aa MW: 29725.3 Da PI: 6.4029

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG406200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8.2e-05	37	86	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + erE+ Rd++N+ f eL +l + + + Ka iL+ +++ +++L Pavir.9KG406200.1.p 37 RKVHKAEREKLKRDHLNDFFVELGNMLEAD----RQNNGKACILTDTTRILRDL 86 677889*********************997....57788888988888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.9E-9	34	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-11	35	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.226	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00112	37	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MVPSERGSVA TAVSTAAADK LLHGPITGKK CKKAPPRKVH KAEREKLKRD HLNDFFVELG 60 NMLEADRQNN GKACILTDTT RILRDLLVQV ESLRKEHSNL QNESHYVAIE RNELQDENGV 120 LRKEISELQD ELRMRTSGNP AGWGHGTAGL NPSVPNSASA VFSSQQAMQQ PTVASTIFPM 180 QQPLAPSAVI EQSYATPPPL ELKLFPGVAS VEVCETSEDQ EAPNHVARPQ ARYPTQSASW 240 PVTLFSGLPR MEDEQCSSST TSSSKEASTG RD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.11618	0.0	callus\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG406200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796613.1	1e-177	transcription factor BHLH062-like
Swissprot	Q69V10	3e-85	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A3L6TI20	1e-180	A0A3L6TI20_PANMI; Transcription factor bHLH47-like
STRING	Pavir.J37675.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG406200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]