PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG402400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CAMTA | ||||||||
Protein Properties | Length: 1023aa MW: 114505 Da PI: 6.3828 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.3 | 2.3e-56 | 20 | 137 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 l+e +krwl+++ei++iL n++ +++++e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+ee Pavir.9KG402400.1.p 20 LQEaQKRWLRPTEICEILSNYKLFSIAAEPPNRPMSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEE 109 56669************************************************************************************* PP CG-1 91 nptfqrrcywlLeeelekivlvhylevk 118 n++fqrr+ywlLee++++ivlvhylevk Pavir.9KG402400.1.p 110 NENFQRRTYWLLEEDFTHIVLVHYLEVK 137 *************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.668 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.3E-78 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.9E-50 | 22 | 136 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.9E-9 | 443 | 532 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 0.00318 | 443 | 531 | No hit | No description |
SuperFamily | SSF81296 | 4.36E-17 | 444 | 530 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.9E-6 | 444 | 527 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 1.71E-15 | 622 | 737 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.52E-12 | 624 | 735 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 8.4E-16 | 632 | 738 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.714 | 643 | 737 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.778 | 676 | 708 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.38E-7 | 842 | 896 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.045 | 845 | 867 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.791 | 846 | 875 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0055 | 847 | 866 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.05 | 868 | 890 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.212 | 869 | 893 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0015 | 871 | 890 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1023 aa Download sequence Send to blast |
MAENRNFALP GQPPDFSQML QEAQKRWLRP TEICEILSNY KLFSIAAEPP NRPMSGSLFL 60 FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL 120 LEEDFTHIVL VHYLEVKGCK QSFSRVKEEF MQLSNVDSPS CSNSITSQNQ MGPQTMEAAE 180 SPISRQTSDY EDTESADNFR ASSRYHPLAE MQQPVDGFIT ENMFYASSST VGSRQGYHGE 240 MLPTTANVDN HSLSHHDIAR MFDDSNTGLS SVSRILFDSV PFNEPFTDYS TGFTEPTLHS 300 SFACLEANNL DDSSRLQTFT SEALYTNHLS KEEADALSFT GIPSSEVNGS RYTEGSIKHP 360 LLKQLSLDLM TIEPTGLKKH DSFSRWMSKE LEEVVDLGIK STSDAFWSNI ETVKVPDGSN 420 VLTNEQLDAY AVSPSLSQDQ LFSILDVSPS CIYVGTNTKV SVTGTFLVNK EHVENRKWSC 480 MFGNVEVPAE VLTDGTLRCY APANQLGRVP FYVTCSNRVA CSEVREFEYR DPETQYMEPS 540 HSQANGVNEM HLHIRLEKLL TLGPDDHQVH VLSSGNEKYE LINAINSLML DVKWSDQESA 600 SANKVVSTAR DQSLKKLVKE KLHHWLICKI NDDGKGPNVL CKEGQGVIHL VAALGYDWAI 660 RPIIVAGVNV NFRDAHGWTA LHWAASLGRE RTIGVLIANG AAAGALTDPT SEFPSGRSPA 720 DLASVNGHKG IAGFLAESAL TSHLSALTIR ESKDSTAEVC GLPAVEDLTG TDSTQLAGED 780 SHAESLEGSL SAVRKSTQAA ARIFQAFRVE SFHRKKVVEY GDDDCGLSDE QTLSLVSVKP 840 GHDTHLHSAA VRIQNKFRGW KGRKEFMIIR QRIVKLQAHV RGHQVRKSYR KVVWSVGIVE 900 KVILRWRRKR PGLRGFRPQK QLEGSSQIQP AKAEDEYDFL HDGRRQAEAR LQRALARVHS 960 MSQYPEAREQ YHRLTTCVAE MKQSRMMQDE MLNDASGGDV NDFMSGLEDL ICMDDAAMPA 1020 IW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.13491 | 0.0 | root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG402400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957063 | 0.0 | EU957063.1 Zea mays clone 1581734 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793079.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X1 | ||||
TrEMBL | A0A2S3IQ52 | 0.0 | A0A2S3IQ52_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03131.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.2 | 0.0 | ethylene induced calmodulin binding protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG402400.1.p |