PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG382300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 479aa MW: 53475.9 Da PI: 4.584

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG382300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	316	364	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +rWT++E++++ ++v + W+ ++ ++ +t k+++s+++++ Pavir.9KG382300.1.p 316 QRWTEDEEKRFERVVFSNPVSlgknFWDHLPHAFP-SKTSKDLVSYYFNV 364 79***********7644334444******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0019	314	367	IPR001005	SANT/Myb domain
CDD	cd00167	1.54E-6	317	365	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MLFTHEKNAD QFDVLSYGNM RRLDSSGDSE ESNFRNGCKD SSSISPENFS FPWLAVENCQ 60 SAALNHDKRP HSDVKPCQVA CKRPKQTDHD AWLYSFGEHP FTREAEISAS ALADELVKTR 120 QPDHIPASNG ATTCSVSSGI PCPNREQSVG VENLHLPDWV TSFPGYFEDC VPVAEYNLVG 180 DIDSPVHEHL PRKTVPIGPE HQAVIPEWRP RVGVSGGSGF CADLGCNSAS TSEPVSQGYD 240 CESDKWVKDC VIPISSCSSP VDWVGDSKID CDCSDEGSVR CARQHVIEAR GSLKMSLGQD 300 KFRELGLCEM GEDIAQRWTE DEEKRFERVV FSNPVSLGKN FWDHLPHAFP SKTSKDLVSY 360 YFNVFMLRKR AQQNRSDLLR VDSDDDELHG DCPVPGQEEE DSAVKSPKLE YFINNSLPIE 420 GNHKEYEGEH IARPSFHGEE IENAGECRHL PNQMPLYSTA ENIEHIYNQD ELQASFDG*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MLFTHEKNAD QFDVLSYGNM RRLDSSGDSE ESNFRNGCKD SSSISPENFS FPWLAVENCQ  60
SAALNHDKRP HSDVKPCQVA CKRPKQTDHD AWLYSFGEHP FTREAEISAS ALADELVKTR  120
QPDHIPASNG ATTCSVSSGI PCPNREQSVG VENLHLPDWV TSFPGYFEDC VPVAEYNLVG  180
DIDSPVHEHL PRKTVPIGPE HQAVIPEWRP RVGVSGGSGF CADLGCNSAS TSEPVSQGYD  240
CESDKWVKDC VIPISSCSSP VDWVGDSKID CDCSDEGSVR CARQHVIEAR GSLKMSLGQD  300
KFRELGLCEM GEDIAQRWTE DEEKRFERVV FSNPVSLGKN FWDHLPHAFP SKTSKDLVSY  360
YFNVFMLRKR AQQNRSDLLR VDSDDDELHG DCPVPGQEEE DSAVKSPKLE YFINNSLPIE  420
GNHKEYEGEH IARPSFHGEE IENAGECRHL PNQMPLYSTA ENIEHIYNQD ELQASFDG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.16898	1e-148	callus\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG382300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795535.1	0.0	uncharacterized protein LOC112875779
TrEMBL	A0A2T7CBA1	0.0	A0A2T7CBA1_9POAL; Uncharacterized protein
STRING	Pavir.Ib02072.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14431	6	6

Link Out ? help Back to Top
Phytozome	Pavir.9KG382300.1.p