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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.9KG358900.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
C3H |
| Protein Properties |
Length: 402aa MW: 43931.4 Da PI: 9.0922 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9KG358900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 34.8 | 2.9e-11 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+elCr+f+r G CkyG++C+F H
Pavir.9KG358900.1.p 5 QELCRNFQR-GSCKYGAQCRFVH 26
79*******.************* PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MNRRQELCRN FQRGSCKYGA QCRFVHASSQ QQQQQQQAKP NPFGFGSASR PQQQQSFGSQ 60
FQQQQQQQQQ KPNPFGFGVQ SGQSRNAPGP AKPFQNKWVR DPSAPTKQPE AAQAPAAAHT 120
SCTDPESCRQ QIAEDFKNET PLWKLTCYAH LRSGPCDIKG DISFEELRAK AYEESRQGHP 180
LQSIIEGERN LQNAKLMEFT NFLNNPRVSV SQTPSFPTVA SFPEVKNNSS FGVPQTNGPP 240
VFSSFSQVGS ANNFGPGPRT APGVPTNSLF GQSSQASHPA FAAPTFGRSD MKFGVSGSFG 300
SQTSQLPSGS LQGSSMSSVG NFPKPPARYP QSASSNHHRD IDRQSQDLLS GIIAPTSAIN 360
QAPVEENKNE NQDDSIWLKE KWSIGEIPLG EPPQRHISHV F*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the adaxial face of the collar, nodes and the basal region of elongating internodes. {ECO:0000269|PubMed:18953406}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
