PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG356400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 434aa MW: 47871.3 Da PI: 4.8166

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG356400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	51.1	4.5e-16	69	178	10	128
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkge 98 ++eelv ++L+++ ++++l+ +v+ +d v+P+ + + wy + d++ ++ +++ r++k+gyWk+ + +v + + Pavir.9KG356400.1.p 69 SEEELV-RFLAERKAEDPLPQ-DVLVGLDFSLVDPRIFT------VDTWYLSWSDDEQPNNsAENSIRKAKNGYWKHAESC-KVPT-SIG 148 689999.99999999999999.99**********996......3568765555554443156677899**88774.4555.477 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+k +L fy+g++p g++t Wvmhey++ Pavir.9KG356400.1.p 149 IMGVKIILEFYEGQEPCGKRTGWVMHEYQV 178 8*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-24	58	199	IPR003441	NAC domain
PROSITE profile	PS51005	25.808	60	199	IPR003441	NAC domain
Pfam	PF02365	9.6E-11	69	178	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MIATIFILDE ASCASVSSAA KPVSLSVKTR ISEAGTLLII VVSSLITMCP PNPELKLAAL 60 NISIRDSWSE EELVRFLAER KAEDPLPQDV LVGLDFSLVD PRIFTVDTWY LSWSDDEQPN 120 NSAENSIRKA KNGYWKHAES CKVPTSIGIM GVKIILEFYE GQEPCGKRTG WVMHEYQVEQ 180 NDEANLPQDY KSLCRVFFQG DKKLDAKSQQ NSMNVDAPND SLETYLQYLA KLEEPKVTAD 240 ANEDVCSSKV QFEQKPQNSL DDIDVIATGD YIELNDLLTS EASASTSENS SKRSMVSEDY 300 FDSDAFLREI LKGGNTTDGQ NQDHKFSIAA PTKSANVVLS PSEQGLVQFH DNNGMVPGTS 360 HQKPVPEGDR GEHSSQGFQQ QSPSVSSYFP SSHVKGSHSN SSSSSQSSIK SHKEQSTRKF 420 GKIRKKYCCF GSF*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MIATIFILDE ASCASVSSAA KPVSLSVKTR ISEAGTLLII VVSSLITMCP PNPELKLAAL  60
NISIRDSWSE EELVRFLAER KAEDPLPQDV LVGLDFSLVD PRIFTVDTWY LSWSDDEQPN  120
NSAENSIRKA KNGYWKHAES CKVPTSIGIM GVKIILEFYE GQEPCGKRTG WVMHEYQVEQ  180
NDEANLPQDY KSLCRVFFQG DKKLDAKSQQ NSMNVDAPND SLETYLQYLA KLEEPKVTAD  240
ANEDVCSSKV QFEQKPQNSL DDIDVIATGD YIELNDLLTS EASASTSENS SKRSMVSEDY  300
FDSDAFLREI LKGGNTTDGQ NQDHKFSIAA PTKSANVVLS PSEQGLVQFH DNNGMVPGTS  360
HQKPVPEGDR GEHSSQGFQQ QSPSVSSYFP SSHVKGSHSN SSSSSQSSIK SHKEQSTRKF  420
GKIRKKYCCF GSF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.38794	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG356400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797455.1	0.0	NAC domain-containing protein 76-like isoform X3
TrEMBL	A0A2T8I320	0.0	A0A2T8I320_9POAL; Uncharacterized protein
STRING	Pavir.Ib03017.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10916	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	3e-15	NAC domain containing protein 102

Link Out ? help Back to Top
Phytozome	Pavir.9KG356400.1.p