PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG354500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 656aa MW: 70696 Da PI: 6.7019

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG354500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.3e-12	480	525	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Pavir.9KG354500.1.p 480 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 525 799*********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.1E-42	57	209	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.39	476	525	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.50E-14	479	529	No hit	No description
SuperFamily	SSF47459	2.09E-18	479	547	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-18	480	547	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-10	480	525	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-16	482	531	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MNLWTDDNAS MMEAFMASAD LPAFPWAGAS SAAATPPPPP PQAPPAMMAP GFNQDTLQQR 60 LQAMIEGSRE TWTYAIFWQS SVDAATGASL LGWGDGYYKG CDDDKRKQRP LTPAAQAEQE 120 HRKRVLRELN SLISGAAAAP DEAVEEEVTD TEWFFLVSMT QSFLNGSGLP GQALFAGQPT 180 WIASGLSAAP CERARQAYNF GLRTMVCVPP PAQQQQPAPG ADQAETDPSV LWLADPVMDI 240 KESLSHHPSA EISVTKPPPP PPQIHFENGS TSTLTENPSP SVHAPPPPPA PPQRQHPQNQ 300 GPFRRELNFS DFASNPSMAA APPFFKPESG EILSFGADSN SRRNPSPAPP AATASLTTAP 360 GSLFSQHTAT LTAAAANDAK NNSNNNNNKR SMEATSRASN TNHHPAATAN EGMLSFSSAP 420 TTRPSTGTGT PAKSESDHSD LDASVREVES SRVVAPPPEA EKRPRKRGRK PANGREEPLN 480 HVEAERQRRE KLNQRFYALR AVVPNVSKMD KASLLGDAIS YINELRGKLT ALESDKDTLH 540 AQIEALKKER DARPAPHAAG HDAGPRCHAV EIDAKILGLE AMIRVQCHKR NHPSARLMTA 600 LRELDLDVYH ASVSVVKDLM IQQVAVKMAS RVYSQEQLNA ALYSRLAEPG TAMGR*

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MNLWTDDNAS MMEAFMASAD LPAFPWAGAS SAAATPPPPP PQAPPAMMAP GFNQDTLQQR  60
LQAMIEGSRE TWTYAIFWQS SVDAATGASL LGWGDGYYKG CDDDKRKQRP LTPAAQAEQE  120
HRKRVLRELN SLISGAAAAP DEAVEEEVTD TEWFFLVSMT QSFLNGSGLP GQALFAGQPT  180
WIASGLSAAP CERARQAYNF GLRTMVCVPP PAQQQQPAPG ADQAETDPSV LWLADPVMDI  240
KESLSHHPSA EISVTKPPPP PPQIHFENGS TSTLTENPSP SVHAPPPPPA PPQRQHPQNQ  300
GPFRRELNFS DFASNPSMAA APPFFKPESG EILSFGADSN SRRNPSPAPP AATASLTTAP  360
GSLFSQHTAT LTAAAANDAK NNSNNNNNKR SMEATSRASN TNHHPAATAN EGMLSFSSAP  420
TTRPSTGTGT PAKSESDHSD LDASVREVES SRVVAPPPEA EKRPRKRGRK PANGREEPLN  480
HVEAERQRRE KLNQRFYALR AVVPNVSKMD KASLLGDAIS YINELRGKLT ALESDKDTLH  540
AQIEALKKER DARPAPHAAG HDAGPRCHAV EIDAKILGLE AMIRVQCHKR NHPSARLMTA  600
LRELDLDVYH ASVSVVKDLM IQQVAVKMAS RVYSQEQLNA ALYSRLAEPG TAMGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rru_A	8e-56	52	210	43	204	Transcription factor MYC3
4ywc_A	8e-56	52	210	43	204	Transcription factor MYC3
4ywc_B	8e-56	52	210	43	204	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	461	469	KRPRKRGRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.292	0.0	callus\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in spikelets and floral organs. {ECO:0000269\|PubMed:24647160}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269\|PubMed:24647160}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG354500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF061107	0.0	AF061107.1 Zea mays transcription factor MYC7E mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795072.1	0.0	transcription factor MYC2-like
Swissprot	Q336P5	0.0	MYC2_ORYSJ; Transcription factor MYC2
TrEMBL	A0A2T7C9G2	0.0	A0A2T7C9G2_9POAL; Uncharacterized protein
STRING	Si039973m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4452	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	4e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG354500.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Cai Q, et al. Jasmonic acid regulates spikelet development in rice. Nat Commun, 2014. 5: p. 3476 [PMID:24647160]