PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG348300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 112aa MW: 12289.1 Da PI: 9.1581 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 51.3 | 3.3e-16 | 31 | 109 | 11 | 83 |
DUF260 11 kCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 +C++ C++ py+ p++q++++ +++k++ ++ +l+ll+ ++ ++ r+++++sl+y+A r+ +Pvy++vg++++ Pavir.9KG348300.1.p 31 GCNDTCTIHPYLqwiktPETQANDTIFLAKFYDRAMLLNLLAVVHADHlRPAVFRSLLYKAYGRIVNPVYSSVGLLWSA 109 6*******************************************77766***************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.099 | 20 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-12 | 31 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MAPAGGRWSP VGERPEPSSR PSIGEGSTTI GCNDTCTIHP YLQWIKTPET QANDTIFLAK 60 FYDRAMLLNL LAVVHADHLR PAVFRSLLYK AYGRIVNPVY SSVGLLWSAT R* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG348300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142806.1 | 2e-36 | uncharacterized protein LOC100275184 | ||||
Swissprot | Q9ZW96 | 7e-33 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | B6SPU9 | 3e-35 | B6SPU9_MAIZE; LOB domain-containing protein 42 | ||||
STRING | GRMZM2G060544_P01 | 6e-36 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 3e-35 | LOB domain-containing protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG348300.1.p |