PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG346300.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 324aa MW: 34608.1 Da PI: 8.0683

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG346300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.1	7.3e-32	23	98	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ + +g + gl+ktLvfy+grap ge+tdWvmheyrl Pavir.9KG346300.2.p 23 KRDLEWFFFCPRDRKYPNGSRTNRATATGYWKATGKDRRIACDGGGVYGLRKTLVFYRGRAPGGERTDWVMHEYRL 98 35669*********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.025	1	121	IPR003441	NAC domain
Pfam	PF02365	1.1E-16	4	98	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-37	22	120	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MHVPQKSELV RTEKFIEKSF LPKRDLEWFF FCPRDRKYPN GSRTNRATAT GYWKATGKDR 60 RIACDGGGVY GLRKTLVFYR GRAPGGERTD WVMHEYRLCQ DLAHGACNFI GAYALCRVIK 120 RHEAGLLQGE PAARAKGASN ARGQMSKVSS TSSLVSSEQQ LSALTTTNSS PPPPPPTLDM 180 SSRGMCAMAA ESGSTFQSPL AYGGDATATA TTAGLPSSPL PPPLFVPGGH SPPHGTFFVG 240 ADLPAESPSH APPPLFGGGD MGMLGAADHE LLRWDSFAYP STFSNGAEMW NAAASPMLCR 300 QASDGGVDDL ALLIFSEDSR IVF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-30	27	124	75	171	NAC domain-containing protein 19
3swm_B	2e-30	27	124	75	171	NAC domain-containing protein 19
3swm_C	2e-30	27	124	75	171	NAC domain-containing protein 19
3swm_D	2e-30	27	124	75	171	NAC domain-containing protein 19
3swp_A	2e-30	27	124	75	171	NAC domain-containing protein 19
3swp_B	2e-30	27	124	75	171	NAC domain-containing protein 19
3swp_C	2e-30	27	124	75	171	NAC domain-containing protein 19
3swp_D	2e-30	27	124	75	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG346300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF795488	1e-127	JF795488.1 Zea mays NAC transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792378.1	1e-155	NAC domain-containing protein 71-like
TrEMBL	A0A2T7C9T3	1e-154	A0A2T7C9T3_9POAL; Uncharacterized protein
TrEMBL	A0A3L6SDE0	1e-154	A0A3L6SDE0_PANMI; Uncharacterized protein
STRING	Pavir.Ib02435.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	2e-49	NAC domain containing protein 71

Link Out ? help Back to Top
Phytozome	Pavir.9KG346300.2.p