PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG339000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 293aa    MW: 31659.7 Da    PI: 6.6894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG339000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-15100144347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky
  Pavir.9KG339000.1.p 100 PWTEEEHRKFLDGLRQLGKGDWRGISKSFVTTRTATQVASHAQKY 144
                          7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9193149IPR017930Myb domain
SuperFamilySSF466895.81E-1894149IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-1896148IPR006447Myb domain, plants
SMARTSM007172.4E-1097147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-1198143IPR009057Homeodomain-like
CDDcd001674.07E-10100145No hitNo description
PfamPF002492.3E-12100144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEGLLRPEEE ENGRKPAPVV LLRLFGVDVV ADEEPDDNDI GFELRKSSSM QNLTIPSADP  60
LLPHGEAGEG KVYASDDLEL ASRQQKRRRR KAQERKKGIP WTEEEHRKFL DGLRQLGKGD  120
WRGISKSFVT TRTATQVASH AQKYFLRQTN PGKKKRRASL FDVGIADFGD DQFQVPPSPP  180
NSATKPAPAQ EIIHTDRGDV PVISADAFPI PSCRGFGGIL LGNNIQVSEL TNYFVTTMGH  240
GETSLASMSS GLEPASSVSS LELSIAVNNL ELSIAPPARY GCGGAAGAIK VL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590KRRRRK
28596KRRRRKAQERKK
38696RRRRKAQERKK
4152156KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.268480.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent leaves at similar levels. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG339000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9612251e-110EU961225.1 Zea mays clone 233639 mcb1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795278.11e-167transcription factor MYBS2-like
SwissprotB8BI933e-80MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC513e-80MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLA0A3L6SAI01e-170A0A3L6SAI0_PANMI; Protein REVEILLE 2-like
STRINGPavir.Ib02262.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-33MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]