PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG327300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 504aa    MW: 51833.2 Da    PI: 6.8903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG327300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.4e-16306351555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hne Er+RRdriN+++ +L++++P++      K +Ka++L ++++Y+k+Lq
  Pavir.9KG327300.1.p 306 HNESERKRRDRINQKMKTLQKMVPNS-----SKTDKASMLDEVIDYLKQLQ 351
                          *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.815301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-19304374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-17306355No hitNo description
PfamPF000101.1E-13306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-18306362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-18307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MNQCVPSWDL DNPALVAAGD GGGGVSNHPV TTAAGSAHHR GAAVTAAGGA FAPVVVPMAD  60
HYYEVAELTW EKGNISSHGL LNRSPPSKYH HPPAAPPPPP HLQGIGGDGG AARDRETLEA  120
VVGEAAARSH FLSRPAVHLA PWVGVGVGAG GAAAVPRAGA DALVPCAARV DEAAAEGADA  180
ADASRRKRAR VVGEDGLVCA SQGSTAPGRR GDSALITRDA CGTGADDVCG FTTTTNNSTS  240
LEREDKGSPD TENTSIGGGA SDSRCFSRRS QREGLCDEGE NVVITGGDGA VRSSVSTKRS  300
RAAAIHNESE RKRRDRINQK MKTLQKMVPN SSKTDKASML DEVIDYLKQL QAQVQVMSRM  360
SSMMMPMAMP QLQMSAVMAQ MAQMAQMAQG MMNMGSLAPP AAAAYAGLTP LIMPPFVPAM  420
PPWDPAASGA AAVGAAADRT PQPAACVAGA APPDAFSAFL ACQAQQSGQQ QQPSGMEAYS  480
QMVALYQKMS QQQQGQPGSS SKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309314ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG327300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792491.10.0transcription factor UNE10 isoform X4
TrEMBLA0A2S3IPM30.0A0A2S3IPM3_9POAL; Uncharacterized protein
STRINGPavir.Ia02188.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-33bHLH family protein