PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG325200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 499aa MW: 58604.6 Da PI: 9.9914

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG325200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71	2.7e-22	6	112	2	91
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekd 73 f+++Y+ +GF+v++s+ ++ k+n++i+k++++C ++gk+++++ + ++ +r+t+++ rt+Ck+ ++vk+ + Pavir.9KG325200.1.p 6 FFSFYGFLAGFEVVVSHVARTsakKKNNKIYKQEMKCHRYGKQTKKEVQtevadetllceasndDKAKRKTNVQIRTDCKCVMVVKEI-S 94 9*************9988888899999***********999989*********99999****************.9 PP FAR1 74 gkwevtkleleHnHelap 91 w+v++l+leHnHel+p Pavir.9KG325200.1.p 95 RIWKVIRLDLEHNHELSP 112 **************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-20	6	112	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-36	232	325	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MQLTIFFSFY GFLAGFEVVV SHVARTSAKK KNNKIYKQEM KCHRYGKQTK KEVQTEVADE 60 TLLCEASNDD KAKRKTNVQI RTDCKCVMVV KEISRIWKVI RLDLEHNHEL SPKDRNQLFS 120 GKKYMTDMEK GIIRTLNDNN IPTRKMIAIL SYLRGGLTAL PYKTKDVQNV RTKINREVIG 180 NDMTHAMEYF RKRKIQDPTF YFRFQVVNDM KVKNIFWREG ISLKWYAEYG DCVSFDTTYM 240 TNRCNLPFAP FVGITGHAHT CLLGCAFLSD ETAETFKWVF QTFVESMGGK HPKSIITDQD 300 KAMKSAIEKV FPNSKHRNCL FHIKSKCYNK NLRCFAINKG LPEKFEDTVN FSVTEDEFEI 360 LWQEMIAEYK LENNKYFNKM WETRKRFIPV YFKNDFFPFI QSTGRSEGTN ARFKDNMGPT 420 YSIVSFLREY QRIMDTIKNK EEIEDNFNKQ KSPKEMLYGY TIEQQAMDLR RPTKTRWSGL 480 RPCGLPVRRR ATGATRRS*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MQLTIFFSFY GFLAGFEVVV SHVARTSAKK KNNKIYKQEM KCHRYGKQTK KEVQTEVADE  60
TLLCEASNDD KAKRKTNVQI RTDCKCVMVV KEISRIWKVI RLDLEHNHEL SPKDRNQLFS  120
GKKYMTDMEK GIIRTLNDNN IPTRKMIAIL SYLRGGLTAL PYKTKDVQNV RTKINREVIG  180
NDMTHAMEYF RKRKIQDPTF YFRFQVVNDM KVKNIFWREG ISLKWYAEYG DCVSFDTTYM  240
TNRCNLPFAP FVGITGHAHT CLLGCAFLSD ETAETFKWVF QTFVESMGGK HPKSIITDQD  300
KAMKSAIEKV FPNSKHRNCL FHIKSKCYNK NLRCFAINKG LPEKFEDTVN FSVTEDEFEI  360
LWQEMIAEYK LENNKYFNKM WETRKRFIPV YFKNDFFPFI QSTGRSEGTN ARFKDNMGPT  420
YSIVSFLREY QRIMDTIKNK EEIEDNFNKQ KSPKEMLYGY TIEQQAMDLR RPTKTRWSGL  480
RPCGLPVRRR ATGATRRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG325200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021315252.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1Z5R331	0.0	A0A1Z5R331_SORBI; Uncharacterized protein
STRING	Pavir.J32386.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-68	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.9KG325200.1.p