PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG311400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TALE | ||||||||
Protein Properties | Length: 603aa MW: 62892.7 Da PI: 7.2124 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.4e-09 | 351 | 388 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Pavir.9KG311400.1.p 351 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 388 664459******************************88 PP | |||||||
2 | BELL | 93.2 | 2.5e-30 | 206 | 276 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +elq+ kakL +l+eV++rY++y+eq+++v++sFeavag +a+ Yt+lA+++iS+hFr+L+d +a q+ Pavir.9KG311400.1.p 206 AAELQRLKAKLYAMLQEVERRYRRYREQMRAVAGSFEAVAGERAAAAYTRLASRTISKHFRSLRDGVAAQL 276 5799****************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.7E-46 | 140 | 274 | IPR006563 | POX domain |
Pfam | PF07526 | 4.2E-42 | 146 | 272 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 329 | 392 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.49E-12 | 332 | 393 | No hit | No description |
SMART | SM00389 | 3.0E-9 | 332 | 396 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-17 | 333 | 400 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-28 | 335 | 398 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.9E-18 | 349 | 388 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MAHDPSLAYA DYFAAAGGVA TLVPEVDAAG EDDGHLYGGA HAHHHHHGLD VFGGARGGLV 60 PAAAHHGKGA AAALGDFGLG GAEHHRLLLG HGQQAPLTSL SLHGSAEAAS LALHHHQLGG 120 GALRQHQPAA WPPPPQQQQG GAAWHLRGSR FLRPTQQLLQ EFCGLPVEAA SAAASKPPTK 180 PGSEDGAGEG SSSSSAPSAQ IQAMDAAELQ RLKAKLYAML QEVERRYRRY REQMRAVAGS 240 FEAVAGERAA AAYTRLASRT ISKHFRSLRD GVAAQLQAVR RALGEKDADG GGAPGAAGMA 300 NKGETTPRLR VLDQCLRQHR AYQAGVLESQ PWRPQRGLPE RAVSILRAWL FEHFLHPYPS 360 DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMVEEMYAE EMKGPQEGGA CSNAAANNSS 420 SNANPSGVYG GGASERLGQG RGGGDDGGGE RKPTRAQLQV HDAGSLASVV SIGSGRGPQN 480 IDFGMMDGHL DFDAYSDAHA TGPGGHHGFG GGVSLTLGLQ QHAGGDPHGG VNVAFAAAQS 540 SAAAHEFLFM AGGGEQHQQQ MVADQGQFTA GMDGDGVAAS HYHHHRGISA ATGFQLLHDL 600 AG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 2e-17 | 338 | 396 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-17 | 338 | 396 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 2e-17 | 338 | 396 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 338 | 396 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.96 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG311400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957060 | 0.0 | EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793881.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | A0A2T7CAK4 | 0.0 | A0A2T7CAK4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia02908.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 6e-68 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG311400.1.p |