PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG306700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 478aa MW: 51462.4 Da PI: 9.8897 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.8 | 1.3e-09 | 332 | 390 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A rs +R+ +i+eLe+kv+ L++e ++L +l l+ +a l +++ Pavir.9KG306700.1.p 332 KRVKRVLANRQSAARSKERRMRYIAELEQKVQILQTEATTLSAQLTLLQRDSAGLATQN 390 999*********************************************99998887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.7E-16 | 328 | 392 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.691 | 330 | 393 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.3E-10 | 332 | 389 | No hit | No description |
SuperFamily | SSF57959 | 1.41E-10 | 332 | 383 | No hit | No description |
Pfam | PF00170 | 4.2E-9 | 332 | 390 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.26E-21 | 333 | 384 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MMLRLPAPGG FPERHGGASE LNPHATLPKG SPSVFPSSAR RPAIKYHPSN RVQAPRDTNP 60 DRAAPPQPPH PHEPPRSPHG RVGGGRHSPQ ASMSTANGNG LAAHHHHVQA PMPPPPPLHQ 120 KQRPGLPPTP PPSAPGSHSL HHAGACVDDG SSAQTRRAHR RSRSDVAFGY FQPLPPPSPT 180 PKAEAGGWGL AGGAAAGEDL LNAYMSMESM DGLNNNSDGD SRGSSGMRTN GADSSENESE 240 DYGGGGGDSQ FLLWADAGRK KRNAAGEPAL PPPARHARSL SMDSLMGKLS FSANGEPGRF 300 SLEFGGGEFT PAEMKRIMAD EKLAEMALAD PKRVKRVLAN RQSAARSKER RMRYIAELEQ 360 KVQILQTEAT TLSAQLTLLQ RDSAGLATQN NELKFRLQAM EQQAQLRDAL NEALTTEVQR 420 LKLGDTSSSS GNMPQQMPQL RCQNQMVELH RQQGEQIPFY QLEQREQNGA PRNHDPK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG306700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035229 | 0.0 | BT035229.1 Zea mays full-length cDNA clone ZM_BFb0046N14 mRNA, complete cds. | |||
GenBank | JX469926 | 0.0 | JX469926.1 Zea mays subsp. mays clone UT3184 bZIP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796872.1 | 0.0 | transcription factor RF2b-like | ||||
TrEMBL | A0A2S3IP57 | 0.0 | A0A2S3IP57_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia02926.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3536 | 35 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 4e-57 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG306700.1.p |