PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG304500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 433aa MW: 47659.2 Da PI: 4.321 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.8 | 6.2e-51 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtd elv++yLk+k+ gkkl + ++i+evd+yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gk Pavir.9KG304500.3.p 6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVDLYKFPPWDLPdKsSLRSKDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGK 94 79*************************988.89**************95335666777******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++ +++ vg+kktL+f++g+apkg +tdWvm ey++ Pavir.9KG304500.3.p 95 DRTIIL-NSRIVGMKKTLIFHEGKAPKGDRTDWVMYEYKM 133 ******.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-61 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.856 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-26 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VDLYKFPPWD LPDKSSLRSK 60 DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRTIIL NSRIVGMKKT LIFHEGKAPK 120 GDRTDWVMYE YKMEDEELVS AGFSKDAFVL CKIFKKSGLG PRIGEQYGAP FNEAEWDNAE 180 AETSMLPLMT SSEVVNPTEG PHAQYAVPAG TACEPPLQNT SVACAGEESS FDRGTATTSV 240 EDLTFGYAIA GSAIQDIPAH QSVDGVVSGI NMSNGVNDVY SPHDCDGFLL EELSRFLNDS 300 PLRDTTLGES SGLPPMSEAE AHAFEVNTFG PYNELSVIAG LEDVPNNFSA SNVAATNYMA 360 LPPDRELSTD DFIELNDLLA SDPSFPSEFP AQNSQFIQYP PAQPTYNGHY DVAALPDEAA 420 NFSYPTMQYP FP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-52 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.349 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG304500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806086.1 | 0.0 | NAC domain-containing protein 82-like isoform X1 | ||||
TrEMBL | A0A2T7EDK3 | 0.0 | A0A2T7EDK3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07259.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 4e-84 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG304500.3.p |