PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG279900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 720aa MW: 84468.8 Da PI: 9.0459 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 27.9 | 7.7e-09 | 64 | 127 | 2 | 48 |
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk..............t 48 f+++Y+ +GF+v++s+ ++ +rn+ei+k++++C ++gk+e+++++ + Pavir.9KG279900.1.p 64 FFSFYGFLAGFQVVVSHVARTsakNRNKEIYKQEMKCHRYGKQEKKSEEenteetmmedgnrkD 127 9***************99888787899******************9999666655554433322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-7 | 64 | 128 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-37 | 255 | 348 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.002 | 540 | 578 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.1E-6 | 553 | 580 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MQINEGQHDE NDTNGSQPLT EEEIEEFLKS EQQAAAEGNN ADIDSKYTPQ IGQEFKSRDD 60 ANHFFSFYGF LAGFQVVVSH VARTSAKNRN KEIYKQEMKC HRYGKQEKKS EEENTEETMM 120 EDGNRKDKTK RKTNVQRRNQ LFSGKKYMTD MEKGIIRTLN DNNIPTRKMI AILSYLRGGL 180 TALPYKTKDV QNLRTKINRE VTGNDMTQAM DYFRKRKAED PTFYYRFQVD NDMKVKNLFW 240 REGISLKWYA EYGECVSFDT TYMTNRYNLP FAPFVGITGH AHTCLFACAF LSDETTETFK 300 WVFETFLDSM GGKHPKSIIT DQDKAMKSAI EKVFPESKHR NCFFHIKSKC YNKNLRCFAA 360 NKGLPEIFED TVNFSVTEEE FEMLWQKMIL DYKLEKNKYF TKMWETRKRF IPVYFKNDFF 420 PFIQSTGRSE GTNARFKDNV GPTYSIVSFL REYQRIVDSI RNKEEIEDNF SKEKTTKELH 480 YGYTIEQQAM DLYNINIYLK FMNQLRLTER YKYKETEQGK CFEVWYKSNQ IKKHQRIRKY 540 IVATDLTEGK EEFSCICGKF NKDGILCAHI LKVIVEEEIN KIPEKYFIDR WRKKNTRFHI 600 THSEGSNTTH ELLRFNMLSR KAAILTSKGA KGQIATEYLT AEFERIENHL DTLLKESDGQ 660 SASNISEDAR QVSTDVSNQE IVRLGDPTRI QQKGRPKNPT KLIPMVEQLR AKMAKAEAK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 130 | NRKDKTKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG279900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311831.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | K3Y305 | 0.0 | K3Y305_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J06646.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-73 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG279900.1.p |