PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG270200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 334aa MW: 38946.5 Da PI: 9.5377

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG270200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.2	3.1e-24	38	124	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 + YA+++GF ++k++s++s+++ge+ kr fvC+k+ +++ +++ +k+r+t+ +rt+C+ ++ vk+e +g+w+ + ++l+HnH+l+p Pavir.9KG270200.1.p 38 FAVYARRMGFAIKKNTSYRSRKTGEVNKRLFVCNKQRHNAADDNP-TKQRKTNFIQRTNCQVRMLVKRE-SGQWYASLVHLDHNHDLMP 124 788************************************9999.9*****************9.9*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-21	38	124	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.6E-30	245	333	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDNMFSDTNY PTLSEIVSAI APQEGMHFEM DDVAFYLFAV YARRMGFAIK KNTSYRSRKT 60 GEVNKRLFVC NKQRHNAADD NPTKQRKTNF IQRTNCQVRM LVKRESGQWY ASLVHLDHNH 120 DLMPSEWLVR FMRCHKNISE SDKKFIEILQ KSRVPPRKVM TIFRSLMGSF RNIGFDETDI 180 GNMRSAEREK HKNRDIRDLL EMFTKEQVKT PGFYYSMQVD ENDTVRSVFW TDLMGRNNYH 240 LFGDYISFDT TFSTNRYNMP FAPIVGVNNH GNTVLFGCAL LQNQKTSTFK WLLGAFLDAM 300 GGKMPINIIT DQDKEMWKAI AAVFPDATHR FCY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG270200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319334.1	1e-138	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1Z5RF97	1e-138	A0A1Z5RF97_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.Ib02523.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-68	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.9KG270200.1.p